Results 61 - 80 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10895 | 5' | -60.7 | NC_002794.1 | + | 49405 | 0.7 | 0.536533 |
Target: 5'- cGGccACGGCgG-CCGCGgcGGCGGCGg -3' miRNA: 3'- aCU--UGCUGgCgGGCGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 95817 | 0.7 | 0.536533 |
Target: 5'- gGAGCGGCgGCggCCGgGGgagcGGCGGCGg -3' miRNA: 3'- aCUUGCUGgCG--GGCgCUa---CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 12199 | 0.7 | 0.536533 |
Target: 5'- cGGGCG-CCGCUcggaCGUGccGGCGGCGUc -3' miRNA: 3'- aCUUGCuGGCGG----GCGCuaCCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 115988 | 0.7 | 0.552617 |
Target: 5'- gGAGCGgcGCCGCggagaccgcggagaCCGCGGUGGCgauuGGCGc -3' miRNA: 3'- aCUUGC--UGGCG--------------GGCGCUACCG----CCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 65907 | 0.7 | 0.555471 |
Target: 5'- -cGACGACCuugaccgucgucGCCgGCGgcGGUGGCGUc -3' miRNA: 3'- acUUGCUGG------------CGGgCGCuaCCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 114745 | 0.7 | 0.564058 |
Target: 5'- cGAGCcggcGCCGCCCGCcggcgccGGUccucGGCGGCGa -3' miRNA: 3'- aCUUGc---UGGCGGGCG-------CUA----CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 64805 | 0.7 | 0.565015 |
Target: 5'- cGAGCGA-CG-CCGCGGacGGCGGCGa -3' miRNA: 3'- aCUUGCUgGCgGGCGCUa-CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 191865 | 0.7 | 0.565015 |
Target: 5'- gUGAAaGGCCGgCgGCGGagggGGCGGCGg -3' miRNA: 3'- -ACUUgCUGGCgGgCGCUa---CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 44428 | 0.7 | 0.568844 |
Target: 5'- cGAGCGGCucgacgacaccggcgCGCCCGCccgGAcgucGGCGGCGg -3' miRNA: 3'- aCUUGCUG---------------GCGGGCG---CUa---CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 141614 | 0.7 | 0.57364 |
Target: 5'- -cGGCGACCgGCUCGCGGUcuagcgacgggaaGGCcGGCGUg -3' miRNA: 3'- acUUGCUGG-CGGGCGCUA-------------CCG-CCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 21649 | 0.7 | 0.5746 |
Target: 5'- -aGACGAagaagCGgCgGCGGUGGCGGCGg -3' miRNA: 3'- acUUGCUg----GCgGgCGCUACCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 93994 | 0.7 | 0.5746 |
Target: 5'- gGcGCGGaCGCCgGCGccGGCGGCGg -3' miRNA: 3'- aCuUGCUgGCGGgCGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 107528 | 0.69 | 0.584222 |
Target: 5'- -cGACGGCCgGCgCgGCGccGGCGGCGa -3' miRNA: 3'- acUUGCUGG-CG-GgCGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 51365 | 0.69 | 0.593876 |
Target: 5'- cGAgGCGGCCGCCC-CGuccGGCcGGCGa -3' miRNA: 3'- aCU-UGCUGGCGGGcGCua-CCG-CCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 113159 | 0.69 | 0.593876 |
Target: 5'- -cAGCGugUaGCgCGCGcgGGCGGCGg -3' miRNA: 3'- acUUGCugG-CGgGCGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 107039 | 0.69 | 0.593876 |
Target: 5'- cUGGG-GACC-CCCGCGucggaGGCGGCGg -3' miRNA: 3'- -ACUUgCUGGcGGGCGCua---CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 129060 | 0.69 | 0.593876 |
Target: 5'- cGcGCGACgGUgugUCGCGGcUGGCGGCGg -3' miRNA: 3'- aCuUGCUGgCG---GGCGCU-ACCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 61533 | 0.69 | 0.594843 |
Target: 5'- -cGGCGGCCG-CCGCGAagacgacgccgccgcGGCGGCGg -3' miRNA: 3'- acUUGCUGGCgGGCGCUa--------------CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 127369 | 0.69 | 0.603555 |
Target: 5'- --nGCGGCCGCUCGUGucGGCGGaCGg -3' miRNA: 3'- acuUGCUGGCGGGCGCuaCCGCC-GCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 167148 | 0.69 | 0.603555 |
Target: 5'- aGAucGCGAuuuuCCGCCgGCGuaugGGUGGCGa -3' miRNA: 3'- aCU--UGCU----GGCGGgCGCua--CCGCCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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