Results 81 - 100 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10895 | 5' | -60.7 | NC_002794.1 | + | 79418 | 0.69 | 0.603555 |
Target: 5'- cGAcaaGACCaaggGCCCgGCGgcGGCGGCGg -3' miRNA: 3'- aCUug-CUGG----CGGG-CGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 98357 | 0.69 | 0.603555 |
Target: 5'- cGGcCGAUCGCCgCGCGGcUGGCGGgagaCGUg -3' miRNA: 3'- aCUuGCUGGCGG-GCGCU-ACCGCC----GCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 82033 | 0.69 | 0.603555 |
Target: 5'- -cGACGAUCGCgUggGCGgcGGCGGCGg -3' miRNA: 3'- acUUGCUGGCGgG--CGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 55258 | 0.69 | 0.609371 |
Target: 5'- aGGACG-CCGaagagccggggggCgGCGGUGGCGGCGa -3' miRNA: 3'- aCUUGCuGGCg------------GgCGCUACCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 78074 | 0.69 | 0.610341 |
Target: 5'- cGAACGccgGCCGCCgcccucgccuccguCGCGAaacgcGGCGGCGc -3' miRNA: 3'- aCUUGC---UGGCGG--------------GCGCUa----CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 120966 | 0.69 | 0.613253 |
Target: 5'- cGAccuCGGCCcgGCCUGCGAguucguguagcGGCGGCGg -3' miRNA: 3'- aCUu--GCUGG--CGGGCGCUa----------CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 185623 | 0.69 | 0.613253 |
Target: 5'- cGAGCGACgGCgaGCGAgacucGaGCGGCGg -3' miRNA: 3'- aCUUGCUGgCGggCGCUa----C-CGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 114692 | 0.69 | 0.622963 |
Target: 5'- aGGGCccgGACCuCCUGCGAgacggacGGCGGCGg -3' miRNA: 3'- aCUUG---CUGGcGGGCGCUa------CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 61822 | 0.69 | 0.622963 |
Target: 5'- -cGGCGGCCGCCgGCGGc--CGGCGUc -3' miRNA: 3'- acUUGCUGGCGGgCGCUaccGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 18253 | 0.69 | 0.622963 |
Target: 5'- cGGcCGACCGgcgaCCGCGAgaUGcGCGGCGc -3' miRNA: 3'- aCUuGCUGGCg---GGCGCU--AC-CGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 57406 | 0.69 | 0.63268 |
Target: 5'- ---cCGG-CGCCCGCG-UGGCcGGCGUg -3' miRNA: 3'- acuuGCUgGCGGGCGCuACCG-CCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 71292 | 0.69 | 0.63268 |
Target: 5'- gGAAaauaGCCGCCgGCGcgcucgGGCGGCGa -3' miRNA: 3'- aCUUgc--UGGCGGgCGCua----CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 37937 | 0.69 | 0.63268 |
Target: 5'- --cGCGGCCGCCCGUGccu-CGGCGa -3' miRNA: 3'- acuUGCUGGCGGGCGCuaccGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 146967 | 0.69 | 0.63268 |
Target: 5'- -cAugGACCGCCuguCGCGA-GGuCGGCGc -3' miRNA: 3'- acUugCUGGCGG---GCGCUaCC-GCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 65764 | 0.69 | 0.63268 |
Target: 5'- --cGCcGCCGCCCGUGGUGG-GGCc- -3' miRNA: 3'- acuUGcUGGCGGGCGCUACCgCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 116119 | 0.69 | 0.63268 |
Target: 5'- aGGuCGAguCCG-CCGCGgcGGCGGCGg -3' miRNA: 3'- aCUuGCU--GGCgGGCGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 19437 | 0.68 | 0.641425 |
Target: 5'- --cGCGACCagGCCCcgagcgggcacgaGCGgcGGCGGCGg -3' miRNA: 3'- acuUGCUGG--CGGG-------------CGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 101208 | 0.68 | 0.642397 |
Target: 5'- gGAgGCGGCCGCCCGgcaGAUGGUcGUGc -3' miRNA: 3'- aCU-UGCUGGCGGGCg--CUACCGcCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 19967 | 0.68 | 0.642397 |
Target: 5'- cGAgcuGCGGCCGCCCuuCGGgcuguccguccUGGUGGCGc -3' miRNA: 3'- aCU---UGCUGGCGGGc-GCU-----------ACCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 127971 | 0.68 | 0.642397 |
Target: 5'- cGAGCGACC-CUgGUGGugUGGUGGUGUc -3' miRNA: 3'- aCUUGCUGGcGGgCGCU--ACCGCCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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