miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 54019 0.68 0.646282
Target:  5'- aGcACGGCCGCCUucuugggcgucagcuGCGAcccgucgacgUGGCGGCa- -3'
miRNA:   3'- aCuUGCUGGCGGG---------------CGCU----------ACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 147582 0.68 0.649194
Target:  5'- cGAGCGGCacaccgaggCGCUCGCGGugugcaaucugcacUGGCaGGCGUc -3'
miRNA:   3'- aCUUGCUG---------GCGGGCGCU--------------ACCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 141583 0.68 0.652106
Target:  5'- gUGAucAUGA-CGCCCGCGucgccgGGCGGCu- -3'
miRNA:   3'- -ACU--UGCUgGCGGGCGCua----CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 53258 0.68 0.652106
Target:  5'- -cGGCG-UCGCCgCGCGAcaacggGGCGGCGa -3'
miRNA:   3'- acUUGCuGGCGG-GCGCUa-----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 4054 0.68 0.652106
Target:  5'- aUGAGCGACC-CCCGCGGcaaUGGgugagucuaucuCGGCu- -3'
miRNA:   3'- -ACUUGCUGGcGGGCGCU---ACC------------GCCGca -5'
10895 5' -60.7 NC_002794.1 + 58057 0.68 0.661801
Target:  5'- cGu-CGGCgGCCC-CGgcGGCGGCGg -3'
miRNA:   3'- aCuuGCUGgCGGGcGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 90782 0.68 0.661801
Target:  5'- cUGGugGACCuGacggucgaCCGCGAUuuccaGGUGGCGUg -3'
miRNA:   3'- -ACUugCUGG-Cg-------GGCGCUA-----CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 60627 0.68 0.661801
Target:  5'- cGGACGGgCGgaCCCgGCGccGGCGGCGc -3'
miRNA:   3'- aCUUGCUgGC--GGG-CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 71218 0.68 0.661801
Target:  5'- cGAAgGucCCGgCCGCGuaGUGGCGGCc- -3'
miRNA:   3'- aCUUgCu-GGCgGGCGC--UACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 47327 0.68 0.661801
Target:  5'- gGggUGcCCGgcuCCCGCGgcGGCGGCc- -3'
miRNA:   3'- aCuuGCuGGC---GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 145803 0.68 0.671474
Target:  5'- cGGACGACgaCGCCgC-CGccGGCGGCGa -3'
miRNA:   3'- aCUUGCUG--GCGG-GcGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 26649 0.68 0.681119
Target:  5'- cGGACGGCgGCCgGCucgucGGCGGgGUg -3'
miRNA:   3'- aCUUGCUGgCGGgCGcua--CCGCCgCA- -5'
10895 5' -60.7 NC_002794.1 + 44535 0.68 0.681119
Target:  5'- cGAGCGcGCCGUcgUCGuCGccGGCGGCGg -3'
miRNA:   3'- aCUUGC-UGGCG--GGC-GCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 96736 0.68 0.690727
Target:  5'- -cGACGACCGCCgGCGcGUcucgcaagcGGCcGGCGg -3'
miRNA:   3'- acUUGCUGGCGGgCGC-UA---------CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 80443 0.68 0.690727
Target:  5'- -cGGCGGCCGCCgGCccgucGGCGGCc- -3'
miRNA:   3'- acUUGCUGGCGGgCGcua--CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 131549 0.67 0.700291
Target:  5'- --cACGGCCucGCCCGUGGUcgGcGCGGCGc -3'
miRNA:   3'- acuUGCUGG--CGGGCGCUA--C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 192007 0.67 0.700291
Target:  5'- gGuAGCGGCgGUggCCGCGGcugcuguuucugUGGCGGCGg -3'
miRNA:   3'- aC-UUGCUGgCG--GGCGCU------------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 46771 0.67 0.700291
Target:  5'- cGAcuuCGACC-CCaGCGgcGGCGGCGa -3'
miRNA:   3'- aCUu--GCUGGcGGgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 92955 0.67 0.709804
Target:  5'- aGAAcCGGCCcauCCCGCGc-GGCGGCa- -3'
miRNA:   3'- aCUU-GCUGGc--GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 149715 0.67 0.709804
Target:  5'- gGGugGGCCGCCUGCcucgcuaCGGCGUg -3'
miRNA:   3'- aCUugCUGGCGGGCGcuacc--GCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.