miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 29934 0.66 0.783103
Target:  5'- cGAGCcGCCGUCCGgGAa-GCGGCa- -3'
miRNA:   3'- aCUUGcUGGCGGGCgCUacCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 187587 0.66 0.783103
Target:  5'- gGcGCGGCCGCCguCGCGAcgccCGGCGUc -3'
miRNA:   3'- aCuUGCUGGCGG--GCGCUacc-GCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 63425 0.66 0.783103
Target:  5'- cGGACGAUgagCGCCCGacaccaccaCGGccgcGGCGGCGa -3'
miRNA:   3'- aCUUGCUG---GCGGGC---------GCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 148132 0.66 0.783103
Target:  5'- cGGGCGcgggGCCGCCgggGCGAgGGCGGUc- -3'
miRNA:   3'- aCUUGC----UGGCGGg--CGCUaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 190125 0.66 0.777827
Target:  5'- cGaAGCGGuCCGCgCGcCGAuaccacgcguacugcUGGCGGCGg -3'
miRNA:   3'- aC-UUGCU-GGCGgGC-GCU---------------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 40315 0.66 0.774287
Target:  5'- gGGACGGuuuuccucacCCGCCgCGCGGacgcgccaccGGCGGCGc -3'
miRNA:   3'- aCUUGCU----------GGCGG-GCGCUa---------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 43188 0.66 0.774287
Target:  5'- uUGcGCGcGCCGaCCGgGAaGGUGGCGUg -3'
miRNA:   3'- -ACuUGC-UGGCgGGCgCUaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 194777 0.66 0.774287
Target:  5'- aGAACGGCCGgCaCGCGcgcaGCGGCu- -3'
miRNA:   3'- aCUUGCUGGCgG-GCGCuac-CGCCGca -5'
10895 5' -60.7 NC_002794.1 + 36928 0.66 0.774287
Target:  5'- --cGCGACCGCggaggagaaaguCCGCGucgcgcGGCGGCa- -3'
miRNA:   3'- acuUGCUGGCG------------GGCGCua----CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 122765 0.66 0.774287
Target:  5'- cUGAuCGAgCGCuCCGCGAgcGGCcucgacGGCGUg -3'
miRNA:   3'- -ACUuGCUgGCG-GGCGCUa-CCG------CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 66514 0.66 0.774287
Target:  5'- cGAGCGauagGCCGUccccggguCCGCGAaGGuCGGCGc -3'
miRNA:   3'- aCUUGC----UGGCG--------GGCGCUaCC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 124823 0.66 0.774287
Target:  5'- cGuGCGACCuGUCgGCGAccaucugcaUGGCGGCc- -3'
miRNA:   3'- aCuUGCUGG-CGGgCGCU---------ACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 154097 0.66 0.773399
Target:  5'- cGAAUcuggcuuggGACCGCaaagucaCCGgGAUcGGCGGCGa -3'
miRNA:   3'- aCUUG---------CUGGCG-------GGCgCUA-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 98965 0.66 0.771619
Target:  5'- cUGGGCG-CCGUCgGCGGcgccguggccucggUGGuCGGCGg -3'
miRNA:   3'- -ACUUGCuGGCGGgCGCU--------------ACC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 116357 0.66 0.765355
Target:  5'- --cACGGCCGCgCGguccgaccgguCGGUGGCGuGCGg -3'
miRNA:   3'- acuUGCUGGCGgGC-----------GCUACCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 128158 0.66 0.765355
Target:  5'- cGAcgGCGGCuCGCgCCGCGGacgGGuCGGUGa -3'
miRNA:   3'- aCU--UGCUG-GCG-GGCGCUa--CC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 65944 0.66 0.756318
Target:  5'- -cGGCGGCgGUaucgUCGCGAgcGGCGGCGUc -3'
miRNA:   3'- acUUGCUGgCG----GGCGCUa-CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 142192 0.66 0.756318
Target:  5'- gGAGCGGCaGUgCGgGAagcGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGgGCgCUa--CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 55163 0.66 0.756318
Target:  5'- cGAGuCGAgCGCCgaGCGGgcgacucgaGGCGGCGg -3'
miRNA:   3'- aCUU-GCUgGCGGg-CGCUa--------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 185767 0.66 0.756318
Target:  5'- gGcGCGGCCGCCCGUcacacgucGGCcGGCGc -3'
miRNA:   3'- aCuUGCUGGCGGGCGcua-----CCG-CCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.