Results 41 - 60 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10895 | 5' | -60.7 | NC_002794.1 | + | 108436 | 0.67 | 0.747181 |
Target: 5'- --cGCGACCGgcggcaCUCGCGgcGGCGGCc- -3' miRNA: 3'- acuUGCUGGC------GGGCGCuaCCGCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 91035 | 0.67 | 0.747181 |
Target: 5'- cUGGGCGGCC-CUCGgGGUGGacggGGCGc -3' miRNA: 3'- -ACUUGCUGGcGGGCgCUACCg---CCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 75368 | 0.67 | 0.747181 |
Target: 5'- ---cCGACC-CgCCGCGGccGGCGGCGg -3' miRNA: 3'- acuuGCUGGcG-GGCGCUa-CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 96599 | 0.67 | 0.747181 |
Target: 5'- -cGACGGuCCGCUcuuucuguaCGCGGgcGGCGGCGUc -3' miRNA: 3'- acUUGCU-GGCGG---------GCGCUa-CCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 54457 | 0.67 | 0.747181 |
Target: 5'- aGGgcGCGACCGgacaCCUuggggaugaugGCGGUGGCGGCu- -3' miRNA: 3'- aCU--UGCUGGC----GGG-----------CGCUACCGCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 101944 | 0.67 | 0.747181 |
Target: 5'- aGGGCauGCUGCCCuGCcugcccGUGGCGGCGUc -3' miRNA: 3'- aCUUGc-UGGCGGG-CGc-----UACCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 30044 | 0.67 | 0.744422 |
Target: 5'- gUGAACGACCgagacccggGCCCGCGGgguccGGUcgcccggucgacgaGGCGc -3' miRNA: 3'- -ACUUGCUGG---------CGGGCGCUa----CCG--------------CCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 130114 | 0.67 | 0.737954 |
Target: 5'- aGAGCGccuCCGCCuUGCGAgauauuagacgcUGcGCGGCGc -3' miRNA: 3'- aCUUGCu--GGCGG-GCGCU------------AC-CGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 141377 | 0.67 | 0.737954 |
Target: 5'- aGAacgGCGACCGUCCGuCGuucgGGgGGCu- -3' miRNA: 3'- aCU---UGCUGGCGGGC-GCua--CCgCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 68924 | 0.67 | 0.737954 |
Target: 5'- --cGCGGCguccucguCGCCCGCGGgccGCGGCGc -3' miRNA: 3'- acuUGCUG--------GCGGGCGCUac-CGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 110429 | 0.67 | 0.737954 |
Target: 5'- cGGGCGGCUGUcgUCGuCGGUGGCGGaGg -3' miRNA: 3'- aCUUGCUGGCG--GGC-GCUACCGCCgCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 47787 | 0.67 | 0.737954 |
Target: 5'- cGAGCGGCCGCaguacacggucuCgGCGAacaGGCGGaCGa -3' miRNA: 3'- aCUUGCUGGCG------------GgCGCUa--CCGCC-GCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 48563 | 0.67 | 0.735169 |
Target: 5'- ---cCGGCCGCCCGUccaGAUGggcgagccggaggaGCGGCGc -3' miRNA: 3'- acuuGCUGGCGGGCG---CUAC--------------CGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 53285 | 0.67 | 0.728643 |
Target: 5'- nGAGCGACCacuccagguGCCgaGCGGUcGGCcGGCGc -3' miRNA: 3'- aCUUGCUGG---------CGGg-CGCUA-CCG-CCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 145912 | 0.67 | 0.728643 |
Target: 5'- gGAGuCGACCGCgCCgaGCGGaggGGCcGGCGa -3' miRNA: 3'- aCUU-GCUGGCG-GG--CGCUa--CCG-CCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 190732 | 0.67 | 0.728643 |
Target: 5'- -aGACGcAgCGCCCGCcgccgucucgacGggGGCGGCGg -3' miRNA: 3'- acUUGC-UgGCGGGCG------------CuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 100798 | 0.67 | 0.728643 |
Target: 5'- --cGCGGCCGCUucugcgccuaCGUGccgGGCGGCGg -3' miRNA: 3'- acuUGCUGGCGG----------GCGCua-CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 66843 | 0.67 | 0.727707 |
Target: 5'- cGGGCGccGCCGUCgGCGcgGcgaggccGCGGCGUg -3' miRNA: 3'- aCUUGC--UGGCGGgCGCuaC-------CGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 186281 | 0.67 | 0.719257 |
Target: 5'- gGcGCGGCgGCaCCGCGGccaGGCGGCc- -3' miRNA: 3'- aCuUGCUGgCG-GGCGCUa--CCGCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 186635 | 0.67 | 0.719257 |
Target: 5'- ---cCGACacaGCCCGCGcgGGuCGGCc- -3' miRNA: 3'- acuuGCUGg--CGGGCGCuaCC-GCCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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