miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 58057 0.68 0.661801
Target:  5'- cGu-CGGCgGCCC-CGgcGGCGGCGg -3'
miRNA:   3'- aCuuGCUGgCGGGcGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 141583 0.68 0.652106
Target:  5'- gUGAucAUGA-CGCCCGCGucgccgGGCGGCu- -3'
miRNA:   3'- -ACU--UGCUgGCGGGCGCua----CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 53258 0.68 0.652106
Target:  5'- -cGGCG-UCGCCgCGCGAcaacggGGCGGCGa -3'
miRNA:   3'- acUUGCuGGCGG-GCGCUa-----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 4054 0.68 0.652106
Target:  5'- aUGAGCGACC-CCCGCGGcaaUGGgugagucuaucuCGGCu- -3'
miRNA:   3'- -ACUUGCUGGcGGGCGCU---ACC------------GCCGca -5'
10895 5' -60.7 NC_002794.1 + 147582 0.68 0.649194
Target:  5'- cGAGCGGCacaccgaggCGCUCGCGGugugcaaucugcacUGGCaGGCGUc -3'
miRNA:   3'- aCUUGCUG---------GCGGGCGCU--------------ACCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 54019 0.68 0.646282
Target:  5'- aGcACGGCCGCCUucuugggcgucagcuGCGAcccgucgacgUGGCGGCa- -3'
miRNA:   3'- aCuUGCUGGCGGG---------------CGCU----------ACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 101208 0.68 0.642397
Target:  5'- gGAgGCGGCCGCCCGgcaGAUGGUcGUGc -3'
miRNA:   3'- aCU-UGCUGGCGGGCg--CUACCGcCGCa -5'
10895 5' -60.7 NC_002794.1 + 19967 0.68 0.642397
Target:  5'- cGAgcuGCGGCCGCCCuuCGGgcuguccguccUGGUGGCGc -3'
miRNA:   3'- aCU---UGCUGGCGGGc-GCU-----------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 127971 0.68 0.642397
Target:  5'- cGAGCGACC-CUgGUGGugUGGUGGUGUc -3'
miRNA:   3'- aCUUGCUGGcGGgCGCU--ACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 19437 0.68 0.641425
Target:  5'- --cGCGACCagGCCCcgagcgggcacgaGCGgcGGCGGCGg -3'
miRNA:   3'- acuUGCUGG--CGGG-------------CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 65764 0.69 0.63268
Target:  5'- --cGCcGCCGCCCGUGGUGG-GGCc- -3'
miRNA:   3'- acuUGcUGGCGGGCGCUACCgCCGca -5'
10895 5' -60.7 NC_002794.1 + 146967 0.69 0.63268
Target:  5'- -cAugGACCGCCuguCGCGA-GGuCGGCGc -3'
miRNA:   3'- acUugCUGGCGG---GCGCUaCC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 57406 0.69 0.63268
Target:  5'- ---cCGG-CGCCCGCG-UGGCcGGCGUg -3'
miRNA:   3'- acuuGCUgGCGGGCGCuACCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 37937 0.69 0.63268
Target:  5'- --cGCGGCCGCCCGUGccu-CGGCGa -3'
miRNA:   3'- acuUGCUGGCGGGCGCuaccGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 71292 0.69 0.63268
Target:  5'- gGAAaauaGCCGCCgGCGcgcucgGGCGGCGa -3'
miRNA:   3'- aCUUgc--UGGCGGgCGCua----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 116119 0.69 0.63268
Target:  5'- aGGuCGAguCCG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUuGCU--GGCgGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114692 0.69 0.622963
Target:  5'- aGGGCccgGACCuCCUGCGAgacggacGGCGGCGg -3'
miRNA:   3'- aCUUG---CUGGcGGGCGCUa------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 18253 0.69 0.622963
Target:  5'- cGGcCGACCGgcgaCCGCGAgaUGcGCGGCGc -3'
miRNA:   3'- aCUuGCUGGCg---GGCGCU--AC-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 61822 0.69 0.622963
Target:  5'- -cGGCGGCCGCCgGCGGc--CGGCGUc -3'
miRNA:   3'- acUUGCUGGCGGgCGCUaccGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 185623 0.69 0.613253
Target:  5'- cGAGCGACgGCgaGCGAgacucGaGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGggCGCUa----C-CGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.