miRNA display CGI


Results 1 - 20 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 255 0.67 0.719257
Target:  5'- cGGACuGCCGCCgcgcgcgcggaCGCGAggacGGCGGCc- -3'
miRNA:   3'- aCUUGcUGGCGG-----------GCGCUa---CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 862 0.71 0.490268
Target:  5'- -cAGCG-CgCGCCCGCGAggcGGuCGGCGUg -3'
miRNA:   3'- acUUGCuG-GCGGGCGCUa--CC-GCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 4054 0.68 0.652106
Target:  5'- aUGAGCGACC-CCCGCGGcaaUGGgugagucuaucuCGGCu- -3'
miRNA:   3'- -ACUUGCUGGcGGGCGCU---ACC------------GCCGca -5'
10895 5' -60.7 NC_002794.1 + 11536 0.67 0.719257
Target:  5'- cGGGCGACCGaggaCCGCGGcUGGUcGCu- -3'
miRNA:   3'- aCUUGCUGGCg---GGCGCU-ACCGcCGca -5'
10895 5' -60.7 NC_002794.1 + 12199 0.7 0.536533
Target:  5'- cGGGCG-CCGCUcggaCGUGccGGCGGCGUc -3'
miRNA:   3'- aCUUGCuGGCGG----GCGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 13275 0.71 0.49938
Target:  5'- gGAGCGGCCGCUguUGAcGGCGGCa- -3'
miRNA:   3'- aCUUGCUGGCGGgcGCUaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 13326 0.74 0.356986
Target:  5'- -cGACGACCGCUCccccggucgGgGGUGGCGGCGc -3'
miRNA:   3'- acUUGCUGGCGGG---------CgCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 14497 0.71 0.481234
Target:  5'- -cGGCGGCgGCCCGCGcucGCGGCGc -3'
miRNA:   3'- acUUGCUGgCGGGCGCuacCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 15197 1.06 0.00236
Target:  5'- gUGAACGACCGCCCGCGAUGGCGGCGUc -3'
miRNA:   3'- -ACUUGCUGGCGGGCGCUACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 17990 0.72 0.428851
Target:  5'- --cACGGCCGCCgGCGAguacuacgaGGaCGGCGUg -3'
miRNA:   3'- acuUGCUGGCGGgCGCUa--------CC-GCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 18253 0.69 0.622963
Target:  5'- cGGcCGACCGgcgaCCGCGAgaUGcGCGGCGc -3'
miRNA:   3'- aCUuGCUGGCg---GGCGCU--AC-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 18524 0.72 0.445946
Target:  5'- cGAacGCGGCCGCgaaCGCGAgcacgagcacGGCGGCGa -3'
miRNA:   3'- aCU--UGCUGGCGg--GCGCUa---------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 18990 0.72 0.42632
Target:  5'- gUGAGCGccugucccaaccacACCGucCCCGCGGguuucgcccUGGCGGCGUu -3'
miRNA:   3'- -ACUUGC--------------UGGC--GGGCGCU---------ACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 19062 0.66 0.800362
Target:  5'- ---cUGACCGCCUGCGGUcacGGUGcCGUg -3'
miRNA:   3'- acuuGCUGGCGGGCGCUA---CCGCcGCA- -5'
10895 5' -60.7 NC_002794.1 + 19249 0.66 0.800362
Target:  5'- aUGAugugcCGACCGgCCGCGGcccccgUGGC-GCGUc -3'
miRNA:   3'- -ACUu----GCUGGCgGGCGCU------ACCGcCGCA- -5'
10895 5' -60.7 NC_002794.1 + 19437 0.68 0.641425
Target:  5'- --cGCGACCagGCCCcgagcgggcacgaGCGgcGGCGGCGg -3'
miRNA:   3'- acuUGCUGG--CGGG-------------CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 19967 0.68 0.642397
Target:  5'- cGAgcuGCGGCCGCCCuuCGGgcuguccguccUGGUGGCGc -3'
miRNA:   3'- aCU---UGCUGGCGGGc-GCU-----------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 21649 0.7 0.5746
Target:  5'- -aGACGAagaagCGgCgGCGGUGGCGGCGg -3'
miRNA:   3'- acUUGCUg----GCgGgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 21898 0.72 0.43735
Target:  5'- --cGCGGCCugcGUCgGUGGUGGCGGCGg -3'
miRNA:   3'- acuUGCUGG---CGGgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 26649 0.68 0.681119
Target:  5'- cGGACGGCgGCCgGCucgucGGCGGgGUg -3'
miRNA:   3'- aCUUGCUGgCGGgCGcua--CCGCCgCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.