miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 29934 0.66 0.783103
Target:  5'- cGAGCcGCCGUCCGgGAa-GCGGCa- -3'
miRNA:   3'- aCUUGcUGGCGGGCgCUacCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 30044 0.67 0.744422
Target:  5'- gUGAACGACCgagacccggGCCCGCGGgguccGGUcgcccggucgacgaGGCGc -3'
miRNA:   3'- -ACUUGCUGG---------CGGGCGCUa----CCG--------------CCGCa -5'
10895 5' -60.7 NC_002794.1 + 32859 0.71 0.463414
Target:  5'- -cAGCGGCCgaGCCgGCGGgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGG--CGGgCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 33583 0.73 0.387866
Target:  5'- gUGGugGACCGCCUGCGgcGGaCGcGCa- -3'
miRNA:   3'- -ACUugCUGGCGGGCGCuaCC-GC-CGca -5'
10895 5' -60.7 NC_002794.1 + 34734 0.7 0.536533
Target:  5'- cGGGCGGCCGCagagcgCGCGAcgGcGCGGUGg -3'
miRNA:   3'- aCUUGCUGGCGg-----GCGCUa-C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 35972 0.66 0.789202
Target:  5'- cGGACGGgcCCGCUCGCGGacccgguuuuaUugucgcggggcucgGGCGGCGg -3'
miRNA:   3'- aCUUGCU--GGCGGGCGCU-----------A--------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 36928 0.66 0.774287
Target:  5'- --cGCGACCGCggaggagaaaguCCGCGucgcgcGGCGGCa- -3'
miRNA:   3'- acuUGCUGGCG------------GGCGCua----CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 37732 0.75 0.281245
Target:  5'- cGAGCGGCgGCgCCGcCGgcGGCGGCGc -3'
miRNA:   3'- aCUUGCUGgCG-GGC-GCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 37882 0.71 0.49938
Target:  5'- cGGGCGGCgGgg-GCGGUGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCgggCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 37937 0.69 0.63268
Target:  5'- --cGCGGCCGCCCGUGccu-CGGCGa -3'
miRNA:   3'- acuUGCUGGCGGGCGCuaccGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 38414 0.71 0.481234
Target:  5'- -cGGCGAgCGCUCGcCGAcuccaUGGCGGCGg -3'
miRNA:   3'- acUUGCUgGCGGGC-GCU-----ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 40315 0.66 0.774287
Target:  5'- gGGACGGuuuuccucacCCGCCgCGCGGacgcgccaccGGCGGCGc -3'
miRNA:   3'- aCUUGCU----------GGCGG-GCGCUa---------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 43188 0.66 0.774287
Target:  5'- uUGcGCGcGCCGaCCGgGAaGGUGGCGUg -3'
miRNA:   3'- -ACuUGC-UGGCgGGCgCUaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 44316 0.77 0.213783
Target:  5'- gGAGCGACCGCgaGCGc-GGCGGCGa -3'
miRNA:   3'- aCUUGCUGGCGggCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 44428 0.7 0.568844
Target:  5'- cGAGCGGCucgacgacaccggcgCGCCCGCccgGAcgucGGCGGCGg -3'
miRNA:   3'- aCUUGCUG---------------GCGGGCG---CUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 44535 0.68 0.681119
Target:  5'- cGAGCGcGCCGUcgUCGuCGccGGCGGCGg -3'
miRNA:   3'- aCUUGC-UGGCG--GGC-GCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 46771 0.67 0.700291
Target:  5'- cGAcuuCGACC-CCaGCGgcGGCGGCGa -3'
miRNA:   3'- aCUu--GCUGGcGGgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 47327 0.68 0.661801
Target:  5'- gGggUGcCCGgcuCCCGCGgcGGCGGCc- -3'
miRNA:   3'- aCuuGCuGGC---GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 47787 0.67 0.737954
Target:  5'- cGAGCGGCCGCaguacacggucuCgGCGAacaGGCGGaCGa -3'
miRNA:   3'- aCUUGCUGGCG------------GgCGCUa--CCGCC-GCa -5'
10895 5' -60.7 NC_002794.1 + 48563 0.67 0.735169
Target:  5'- ---cCGGCCGCCCGUccaGAUGggcgagccggaggaGCGGCGc -3'
miRNA:   3'- acuuGCUGGCGGGCG---CUAC--------------CGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.