miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 63425 0.66 0.783103
Target:  5'- cGGACGAUgagCGCCCGacaccaccaCGGccgcGGCGGCGa -3'
miRNA:   3'- aCUUGCUG---GCGGGC---------GCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 63480 0.66 0.800362
Target:  5'- -cGGCGGCCGCCguCGaCGAcgccGCGGCGUc -3'
miRNA:   3'- acUUGCUGGCGG--GC-GCUac--CGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 64805 0.7 0.565015
Target:  5'- cGAGCGA-CG-CCGCGGacGGCGGCGa -3'
miRNA:   3'- aCUUGCUgGCgGGCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 65212 0.66 0.800362
Target:  5'- --cACGAccCCGCUCGCauuccacgGGCGGCGg -3'
miRNA:   3'- acuUGCU--GGCGGGCGcua-----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 65764 0.69 0.63268
Target:  5'- --cGCcGCCGCCCGUGGUGG-GGCc- -3'
miRNA:   3'- acuUGcUGGCGGGCGCUACCgCCGca -5'
10895 5' -60.7 NC_002794.1 + 65907 0.7 0.555471
Target:  5'- -cGACGACCuugaccgucgucGCCgGCGgcGGUGGCGUc -3'
miRNA:   3'- acUUGCUGG------------CGGgCGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 65944 0.66 0.756318
Target:  5'- -cGGCGGCgGUaucgUCGCGAgcGGCGGCGUc -3'
miRNA:   3'- acUUGCUGgCG----GGCGCUa-CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 66514 0.66 0.774287
Target:  5'- cGAGCGauagGCCGUccccggguCCGCGAaGGuCGGCGc -3'
miRNA:   3'- aCUUGC----UGGCG--------GGCGCUaCC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 66730 0.8 0.145821
Target:  5'- --cGCcACCGCCgGCGGUGGCGGCGg -3'
miRNA:   3'- acuUGcUGGCGGgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 66843 0.67 0.727707
Target:  5'- cGGGCGccGCCGUCgGCGcgGcgaggccGCGGCGUg -3'
miRNA:   3'- aCUUGC--UGGCGGgCGCuaC-------CGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 68924 0.67 0.737954
Target:  5'- --cGCGGCguccucguCGCCCGCGGgccGCGGCGc -3'
miRNA:   3'- acuUGCUG--------GCGGGCGCUac-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 71218 0.68 0.661801
Target:  5'- cGAAgGucCCGgCCGCGuaGUGGCGGCc- -3'
miRNA:   3'- aCUUgCu-GGCgGGCGC--UACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 71292 0.69 0.63268
Target:  5'- gGAAaauaGCCGCCgGCGcgcucgGGCGGCGa -3'
miRNA:   3'- aCUUgc--UGGCGGgCGCua----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 75368 0.67 0.747181
Target:  5'- ---cCGACC-CgCCGCGGccGGCGGCGg -3'
miRNA:   3'- acuuGCUGGcG-GGCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 78074 0.69 0.610341
Target:  5'- cGAACGccgGCCGCCgcccucgccuccguCGCGAaacgcGGCGGCGc -3'
miRNA:   3'- aCUUGC---UGGCGG--------------GCGCUa----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 79418 0.69 0.603555
Target:  5'- cGAcaaGACCaaggGCCCgGCGgcGGCGGCGg -3'
miRNA:   3'- aCUug-CUGG----CGGG-CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 80443 0.68 0.690727
Target:  5'- -cGGCGGCCGCCgGCccgucGGCGGCc- -3'
miRNA:   3'- acUUGCUGGCGGgCGcua--CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 82033 0.69 0.603555
Target:  5'- -cGACGAUCGCgUggGCGgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGGCGgG--CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 90782 0.68 0.661801
Target:  5'- cUGGugGACCuGacggucgaCCGCGAUuuccaGGUGGCGUg -3'
miRNA:   3'- -ACUugCUGG-Cg-------GGCGCUA-----CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 91035 0.67 0.747181
Target:  5'- cUGGGCGGCC-CUCGgGGUGGacggGGCGc -3'
miRNA:   3'- -ACUUGCUGGcGGGCgCUACCg---CCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.