miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 91836 0.66 0.789202
Target:  5'- cUGAACGAcgccugucgcaCCGucaaguucgaggguCCCgGgGGUGGCGGCGg -3'
miRNA:   3'- -ACUUGCU-----------GGC--------------GGG-CgCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 92320 0.72 0.445946
Target:  5'- cGGGCGGCggggGCCCGgGcgGGCGGCu- -3'
miRNA:   3'- aCUUGCUGg---CGGGCgCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 92955 0.67 0.709804
Target:  5'- aGAAcCGGCCcauCCCGCGc-GGCGGCa- -3'
miRNA:   3'- aCUU-GCUGGc--GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 93994 0.7 0.5746
Target:  5'- gGcGCGGaCGCCgGCGccGGCGGCGg -3'
miRNA:   3'- aCuUGCUgGCGGgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 94046 0.74 0.356986
Target:  5'- aGAGCGGCgGCggUGCGggGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGg-GCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 95019 0.72 0.445946
Target:  5'- gGGGCGGCUGUgcggcaucUCGcCGGUGGCGGCGc -3'
miRNA:   3'- aCUUGCUGGCG--------GGC-GCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 95764 0.71 0.472281
Target:  5'- gGGGCGGCgG-CCGCGAcGGCGGCc- -3'
miRNA:   3'- aCUUGCUGgCgGGCGCUaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 95817 0.7 0.536533
Target:  5'- gGAGCGGCgGCggCCGgGGgagcGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCG--GGCgCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 96599 0.67 0.747181
Target:  5'- -cGACGGuCCGCUcuuucuguaCGCGGgcGGCGGCGUc -3'
miRNA:   3'- acUUGCU-GGCGG---------GCGCUa-CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 96736 0.68 0.690727
Target:  5'- -cGACGACCGCCgGCGcGUcucgcaagcGGCcGGCGg -3'
miRNA:   3'- acUUGCUGGCGGgCGC-UA---------CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 98357 0.69 0.603555
Target:  5'- cGGcCGAUCGCCgCGCGGcUGGCGGgagaCGUg -3'
miRNA:   3'- aCUuGCUGGCGG-GCGCU-ACCGCC----GCA- -5'
10895 5' -60.7 NC_002794.1 + 98965 0.66 0.771619
Target:  5'- cUGGGCG-CCGUCgGCGGcgccguggccucggUGGuCGGCGg -3'
miRNA:   3'- -ACUUGCuGGCGGgCGCU--------------ACC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 99763 0.77 0.229225
Target:  5'- -cGACGuugccGCCGCCCGCGGUGcCGGCGUc -3'
miRNA:   3'- acUUGC-----UGGCGGGCGCUACcGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 100798 0.67 0.728643
Target:  5'- --cGCGGCCGCUucugcgccuaCGUGccgGGCGGCGg -3'
miRNA:   3'- acuUGCUGGCGG----------GCGCua-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 101208 0.68 0.642397
Target:  5'- gGAgGCGGCCGCCCGgcaGAUGGUcGUGc -3'
miRNA:   3'- aCU-UGCUGGCGGGCg--CUACCGcCGCa -5'
10895 5' -60.7 NC_002794.1 + 101260 0.79 0.181201
Target:  5'- cGGGgGGCCGCCCccggcgcCGGUGGCGGCGg -3'
miRNA:   3'- aCUUgCUGGCGGGc------GCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 101575 0.66 0.791797
Target:  5'- gGAGugcCGGCCG-CCGCGGccggGGgGGCGg -3'
miRNA:   3'- aCUU---GCUGGCgGGCGCUa---CCgCCGCa -5'
10895 5' -60.7 NC_002794.1 + 101618 0.7 0.532771
Target:  5'- cGGGCGGgggugccguuUCGUCCGCGAgcgugggcgggcgGGCGGCGg -3'
miRNA:   3'- aCUUGCU----------GGCGGGCGCUa------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 101944 0.67 0.747181
Target:  5'- aGGGCauGCUGCCCuGCcugcccGUGGCGGCGUc -3'
miRNA:   3'- aCUUGc-UGGCGGG-CGc-----UACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 103795 0.77 0.234578
Target:  5'- cUGAGCuugagGugCGCCUGCGAcGGCGGCGc -3'
miRNA:   3'- -ACUUG-----CugGCGGGCGCUaCCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.