miRNA display CGI


Results 1 - 20 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 195114 0.66 0.800362
Target:  5'- cGucuCGugCGCCCGCGGc-GCGcGCGg -3'
miRNA:   3'- aCuu-GCugGCGGGCGCUacCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 194777 0.66 0.774287
Target:  5'- aGAACGGCCGgCaCGCGcgcaGCGGCu- -3'
miRNA:   3'- aCUUGCUGGCgG-GCGCuac-CGCCGca -5'
10895 5' -60.7 NC_002794.1 + 193731 0.67 0.709804
Target:  5'- gUGuccuCG-CCGCCCGCGGcuucGGCGaGCGa -3'
miRNA:   3'- -ACuu--GCuGGCGGGCGCUa---CCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 192007 0.67 0.700291
Target:  5'- gGuAGCGGCgGUggCCGCGGcugcuguuucugUGGCGGCGg -3'
miRNA:   3'- aC-UUGCUGgCG--GGCGCU------------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 191865 0.7 0.565015
Target:  5'- gUGAAaGGCCGgCgGCGGagggGGCGGCGg -3'
miRNA:   3'- -ACUUgCUGGCgGgCGCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 191666 0.73 0.395855
Target:  5'- gGGACGG-CGCCggcaGCGgcGGCGGCGUg -3'
miRNA:   3'- aCUUGCUgGCGGg---CGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 190732 0.67 0.728643
Target:  5'- -aGACGcAgCGCCCGCcgccgucucgacGggGGCGGCGg -3'
miRNA:   3'- acUUGC-UgGCGGGCG------------CuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 190125 0.66 0.777827
Target:  5'- cGaAGCGGuCCGCgCGcCGAuaccacgcguacugcUGGCGGCGg -3'
miRNA:   3'- aC-UUGCU-GGCGgGC-GCU---------------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 188355 0.66 0.791797
Target:  5'- --cGCGcCCGUCCG-GccGGCGGCGg -3'
miRNA:   3'- acuUGCuGGCGGGCgCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 187587 0.66 0.783103
Target:  5'- gGcGCGGCCGCCguCGCGAcgccCGGCGUc -3'
miRNA:   3'- aCuUGCUGGCGG--GCGCUacc-GCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 186635 0.67 0.719257
Target:  5'- ---cCGACacaGCCCGCGcgGGuCGGCc- -3'
miRNA:   3'- acuuGCUGg--CGGGCGCuaCC-GCCGca -5'
10895 5' -60.7 NC_002794.1 + 186281 0.67 0.719257
Target:  5'- gGcGCGGCgGCaCCGCGGccaGGCGGCc- -3'
miRNA:   3'- aCuUGCUGgCG-GGCGCUa--CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 185767 0.66 0.756318
Target:  5'- gGcGCGGCCGCCCGUcacacgucGGCcGGCGc -3'
miRNA:   3'- aCuUGCUGGCGGGCGcua-----CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 185623 0.69 0.613253
Target:  5'- cGAGCGACgGCgaGCGAgacucGaGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGggCGCUa----C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 184560 0.73 0.372208
Target:  5'- cGGACGccucacgcGCCG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUUGC--------UGGCgGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 184447 0.72 0.411325
Target:  5'- cUGAGCGcgccgcuGCCGCCCGCGGgccgcgcgaacGGCGcGCGg -3'
miRNA:   3'- -ACUUGC-------UGGCGGGCGCUa----------CCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 183690 0.74 0.334984
Target:  5'- cGAGCGcCCGCCgCGCGc-GGCGGCa- -3'
miRNA:   3'- aCUUGCuGGCGG-GCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 183193 0.67 0.719257
Target:  5'- -aGACGcGCCGCCaCGCc--GGCGGCGc -3'
miRNA:   3'- acUUGC-UGGCGG-GCGcuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 181746 0.7 0.526212
Target:  5'- cGAGCGGCCggccaGCCCGCugacgccGAUGGCGccGCGc -3'
miRNA:   3'- aCUUGCUGG-----CGGGCG-------CUACCGC--CGCa -5'
10895 5' -60.7 NC_002794.1 + 179973 0.7 0.527147
Target:  5'- gGAGCGGCaggaGCCaagGCGGUGGCcGCGa -3'
miRNA:   3'- aCUUGCUGg---CGGg--CGCUACCGcCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.