miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 141377 0.67 0.737954
Target:  5'- aGAacgGCGACCGUCCGuCGuucgGGgGGCu- -3'
miRNA:   3'- aCU---UGCUGGCGGGC-GCua--CCgCCGca -5'
10895 5' -60.7 NC_002794.1 + 140498 0.67 0.709804
Target:  5'- cGGGCG-CUGUaCCGCGAcuuccaccgcUGGCGGCa- -3'
miRNA:   3'- aCUUGCuGGCG-GGCGCU----------ACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 140024 0.72 0.412149
Target:  5'- aGGccGCGGCC-CCCGCG--GGCGGCGg -3'
miRNA:   3'- aCU--UGCUGGcGGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 138418 0.78 0.190034
Target:  5'- ---cCGGCCGCCgacucgucgagcCGCGGUGGCGGCGg -3'
miRNA:   3'- acuuGCUGGCGG------------GCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 137599 0.79 0.172734
Target:  5'- gGAGCcGCCGCCgGCGGUcgcGGCGGCGg -3'
miRNA:   3'- aCUUGcUGGCGGgCGCUA---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 131549 0.67 0.700291
Target:  5'- --cACGGCCucGCCCGUGGUcgGcGCGGCGc -3'
miRNA:   3'- acuUGCUGG--CGGGCGCUA--C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 131513 0.67 0.719257
Target:  5'- --cACGACCucGCCCGUGAUcGGCGcCGg -3'
miRNA:   3'- acuUGCUGG--CGGGCGCUA-CCGCcGCa -5'
10895 5' -60.7 NC_002794.1 + 130114 0.67 0.737954
Target:  5'- aGAGCGccuCCGCCuUGCGAgauauuagacgcUGcGCGGCGc -3'
miRNA:   3'- aCUUGCu--GGCGG-GCGCU------------AC-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 129208 0.74 0.327874
Target:  5'- cGAGCGGCCGaCgGCGGUGGauaGGCGc -3'
miRNA:   3'- aCUUGCUGGCgGgCGCUACCg--CCGCa -5'
10895 5' -60.7 NC_002794.1 + 129060 0.69 0.593876
Target:  5'- cGcGCGACgGUgugUCGCGGcUGGCGGCGg -3'
miRNA:   3'- aCuUGCUGgCG---GGCGCU-ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 128158 0.66 0.765355
Target:  5'- cGAcgGCGGCuCGCgCCGCGGacgGGuCGGUGa -3'
miRNA:   3'- aCU--UGCUG-GCG-GGCGCUa--CC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 127971 0.68 0.642397
Target:  5'- cGAGCGACC-CUgGUGGugUGGUGGUGUc -3'
miRNA:   3'- aCUUGCUGGcGGgCGCU--ACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 127369 0.69 0.603555
Target:  5'- --nGCGGCCGCUCGUGucGGCGGaCGg -3'
miRNA:   3'- acuUGCUGGCGGGCGCuaCCGCC-GCa -5'
10895 5' -60.7 NC_002794.1 + 127336 0.72 0.454634
Target:  5'- cGAGCG-CCGCUgccgagacgcuCGCGgcGGCGGCGc -3'
miRNA:   3'- aCUUGCuGGCGG-----------GCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 126958 0.66 0.783103
Target:  5'- uUGAGCGACga-CCGCGAgagcGGCcGCGUg -3'
miRNA:   3'- -ACUUGCUGgcgGGCGCUa---CCGcCGCA- -5'
10895 5' -60.7 NC_002794.1 + 126380 0.71 0.481234
Target:  5'- gUGGGCG-CCgggGCCUGCGc-GGCGGCGUg -3'
miRNA:   3'- -ACUUGCuGG---CGGGCGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 126284 0.66 0.791797
Target:  5'- cUGGGCuugcuGugCGCCgCGCGccUGGCGGUGc -3'
miRNA:   3'- -ACUUG-----CugGCGG-GCGCu-ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 124823 0.66 0.774287
Target:  5'- cGuGCGACCuGUCgGCGAccaucugcaUGGCGGCc- -3'
miRNA:   3'- aCuUGCUGG-CGGgCGCU---------ACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 122765 0.66 0.774287
Target:  5'- cUGAuCGAgCGCuCCGCGAgcGGCcucgacGGCGUg -3'
miRNA:   3'- -ACUuGCUgGCG-GGCGCUa-CCG------CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 120966 0.69 0.613253
Target:  5'- cGAccuCGGCCcgGCCUGCGAguucguguagcGGCGGCGg -3'
miRNA:   3'- aCUu--GCUGG--CGGGCGCUa----------CCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.