miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 120060 0.75 0.281245
Target:  5'- -uGGCGGCCGCggaggccgacgCgGCGGUGGCGGCGa -3'
miRNA:   3'- acUUGCUGGCG-----------GgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 119441 0.73 0.387866
Target:  5'- -cGACGGCgG-CgGCGGUGGCGGCGUc -3'
miRNA:   3'- acUUGCUGgCgGgCGCUACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 118666 0.7 0.536533
Target:  5'- gUGGGCGcgaCGCCCGCGGccgccgccGGCGGCa- -3'
miRNA:   3'- -ACUUGCug-GCGGGCGCUa-------CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 117653 0.7 0.536533
Target:  5'- cGGACGAagagCGCCaCGCGc-GGCGGCGc -3'
miRNA:   3'- aCUUGCUg---GCGG-GCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 117367 0.71 0.49938
Target:  5'- gGAGCGgcggGCCGCCUGCacGGUcGCGGCGa -3'
miRNA:   3'- aCUUGC----UGGCGGGCG--CUAcCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 117051 0.66 0.791797
Target:  5'- cGAgguACgGGCCGUCCGUGAgccucggguacGGCGGCa- -3'
miRNA:   3'- aCU---UG-CUGGCGGGCGCUa----------CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 116357 0.66 0.765355
Target:  5'- --cACGGCCGCgCGguccgaccgguCGGUGGCGuGCGg -3'
miRNA:   3'- acuUGCUGGCGgGC-----------GCUACCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 116119 0.69 0.63268
Target:  5'- aGGuCGAguCCG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUuGCU--GGCgGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 115988 0.7 0.552617
Target:  5'- gGAGCGgcGCCGCggagaccgcggagaCCGCGGUGGCgauuGGCGc -3'
miRNA:   3'- aCUUGC--UGGCG--------------GGCGCUACCG----CCGCa -5'
10895 5' -60.7 NC_002794.1 + 115387 0.66 0.800362
Target:  5'- cUGAcCGcCgGCCCGUGcugcggacuccaGUGGCGGCa- -3'
miRNA:   3'- -ACUuGCuGgCGGGCGC------------UACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 115088 0.66 0.800362
Target:  5'- -cGGCGGCCGCCCGCaGccGcGCGuccGCGUc -3'
miRNA:   3'- acUUGCUGGCGGGCG-CuaC-CGC---CGCA- -5'
10895 5' -60.7 NC_002794.1 + 114745 0.7 0.564058
Target:  5'- cGAGCcggcGCCGCCCGCcggcgccGGUccucGGCGGCGa -3'
miRNA:   3'- aCUUGc---UGGCGGGCG-------CUA----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114692 0.69 0.622963
Target:  5'- aGGGCccgGACCuCCUGCGAgacggacGGCGGCGg -3'
miRNA:   3'- aCUUG---CUGGcGGGCGCUa------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 113159 0.69 0.593876
Target:  5'- -cAGCGugUaGCgCGCGcgGGCGGCGg -3'
miRNA:   3'- acUUGCugG-CGgGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 112334 0.72 0.43735
Target:  5'- gGAGCGcGCCgGCCgGCGGcgccGGCGGCGg -3'
miRNA:   3'- aCUUGC-UGG-CGGgCGCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 112250 0.71 0.517824
Target:  5'- cGAACG-CCGCCgGCGGgacCGGCGUc -3'
miRNA:   3'- aCUUGCuGGCGGgCGCUaccGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 110617 0.71 0.481234
Target:  5'- gGAGCGggaGCCGCggcgCCGCGgcGGCGGgGUc -3'
miRNA:   3'- aCUUGC---UGGCG----GGCGCuaCCGCCgCA- -5'
10895 5' -60.7 NC_002794.1 + 110429 0.67 0.737954
Target:  5'- cGGGCGGCUGUcgUCGuCGGUGGCGGaGg -3'
miRNA:   3'- aCUUGCUGGCG--GGC-GCUACCGCCgCa -5'
10895 5' -60.7 NC_002794.1 + 108436 0.67 0.747181
Target:  5'- --cGCGACCGgcggcaCUCGCGgcGGCGGCc- -3'
miRNA:   3'- acuUGCUGGC------GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 107528 0.69 0.584222
Target:  5'- -cGACGGCCgGCgCgGCGccGGCGGCGa -3'
miRNA:   3'- acUUGCUGG-CG-GgCGCuaCCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.