Results 81 - 100 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10895 | 5' | -60.7 | NC_002794.1 | + | 107224 | 0.71 | 0.517824 |
Target: 5'- cGGGCGG-CGCgCGaCGggGGCGGCGUc -3' miRNA: 3'- aCUUGCUgGCGgGC-GCuaCCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 107039 | 0.69 | 0.593876 |
Target: 5'- cUGGG-GACC-CCCGCGucggaGGCGGCGg -3' miRNA: 3'- -ACUUgCUGGcGGGCGCua---CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 106980 | 0.76 | 0.27503 |
Target: 5'- -cGGCGGCCgGCaCgGCGGUGGCGGCGc -3' miRNA: 3'- acUUGCUGG-CG-GgCGCUACCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 105427 | 0.78 | 0.19459 |
Target: 5'- aGggUGGCCGCcgCCGCGccGGCGGCGc -3' miRNA: 3'- aCuuGCUGGCG--GGCGCuaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 104884 | 0.66 | 0.800362 |
Target: 5'- gUGaAGCgGGCCGgCCGCGA-GGCGcCGUg -3' miRNA: 3'- -AC-UUG-CUGGCgGGCGCUaCCGCcGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 104439 | 0.72 | 0.440777 |
Target: 5'- cGGACG-CCG-CCGCGGgcggcccgagcccgGGCGGCGUg -3' miRNA: 3'- aCUUGCuGGCgGGCGCUa-------------CCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 103795 | 0.77 | 0.234578 |
Target: 5'- cUGAGCuugagGugCGCCUGCGAcGGCGGCGc -3' miRNA: 3'- -ACUUG-----CugGCGGGCGCUaCCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 101944 | 0.67 | 0.747181 |
Target: 5'- aGGGCauGCUGCCCuGCcugcccGUGGCGGCGUc -3' miRNA: 3'- aCUUGc-UGGCGGG-CGc-----UACCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 101618 | 0.7 | 0.532771 |
Target: 5'- cGGGCGGgggugccguuUCGUCCGCGAgcgugggcgggcgGGCGGCGg -3' miRNA: 3'- aCUUGCU----------GGCGGGCGCUa------------CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 101575 | 0.66 | 0.791797 |
Target: 5'- gGAGugcCGGCCG-CCGCGGccggGGgGGCGg -3' miRNA: 3'- aCUU---GCUGGCgGGCGCUa---CCgCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 101260 | 0.79 | 0.181201 |
Target: 5'- cGGGgGGCCGCCCccggcgcCGGUGGCGGCGg -3' miRNA: 3'- aCUUgCUGGCGGGc------GCUACCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 101208 | 0.68 | 0.642397 |
Target: 5'- gGAgGCGGCCGCCCGgcaGAUGGUcGUGc -3' miRNA: 3'- aCU-UGCUGGCGGGCg--CUACCGcCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 100798 | 0.67 | 0.728643 |
Target: 5'- --cGCGGCCGCUucugcgccuaCGUGccgGGCGGCGg -3' miRNA: 3'- acuUGCUGGCGG----------GCGCua-CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 99763 | 0.77 | 0.229225 |
Target: 5'- -cGACGuugccGCCGCCCGCGGUGcCGGCGUc -3' miRNA: 3'- acUUGC-----UGGCGGGCGCUACcGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 98965 | 0.66 | 0.771619 |
Target: 5'- cUGGGCG-CCGUCgGCGGcgccguggccucggUGGuCGGCGg -3' miRNA: 3'- -ACUUGCuGGCGGgCGCU--------------ACC-GCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 98357 | 0.69 | 0.603555 |
Target: 5'- cGGcCGAUCGCCgCGCGGcUGGCGGgagaCGUg -3' miRNA: 3'- aCUuGCUGGCGG-GCGCU-ACCGCC----GCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 96736 | 0.68 | 0.690727 |
Target: 5'- -cGACGACCGCCgGCGcGUcucgcaagcGGCcGGCGg -3' miRNA: 3'- acUUGCUGGCGGgCGC-UA---------CCG-CCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 96599 | 0.67 | 0.747181 |
Target: 5'- -cGACGGuCCGCUcuuucuguaCGCGGgcGGCGGCGUc -3' miRNA: 3'- acUUGCU-GGCGG---------GCGCUa-CCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 95817 | 0.7 | 0.536533 |
Target: 5'- gGAGCGGCgGCggCCGgGGgagcGGCGGCGg -3' miRNA: 3'- aCUUGCUGgCG--GGCgCUa---CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 95764 | 0.71 | 0.472281 |
Target: 5'- gGGGCGGCgG-CCGCGAcGGCGGCc- -3' miRNA: 3'- aCUUGCUGgCgGGCGCUaCCGCCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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