Results 61 - 80 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10895 | 5' | -60.7 | NC_002794.1 | + | 148132 | 0.66 | 0.783103 |
Target: 5'- cGGGCGcgggGCCGCCgggGCGAgGGCGGUc- -3' miRNA: 3'- aCUUGC----UGGCGGg--CGCUaCCGCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 63425 | 0.66 | 0.783103 |
Target: 5'- cGGACGAUgagCGCCCGacaccaccaCGGccgcGGCGGCGa -3' miRNA: 3'- aCUUGCUG---GCGGGC---------GCUa---CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 40315 | 0.66 | 0.774287 |
Target: 5'- gGGACGGuuuuccucacCCGCCgCGCGGacgcgccaccGGCGGCGc -3' miRNA: 3'- aCUUGCU----------GGCGG-GCGCUa---------CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 128158 | 0.66 | 0.765355 |
Target: 5'- cGAcgGCGGCuCGCgCCGCGGacgGGuCGGUGa -3' miRNA: 3'- aCU--UGCUG-GCG-GGCGCUa--CC-GCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 116357 | 0.66 | 0.765355 |
Target: 5'- --cACGGCCGCgCGguccgaccgguCGGUGGCGuGCGg -3' miRNA: 3'- acuUGCUGGCGgGC-----------GCUACCGC-CGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 98965 | 0.66 | 0.771619 |
Target: 5'- cUGGGCG-CCGUCgGCGGcgccguggccucggUGGuCGGCGg -3' miRNA: 3'- -ACUUGCuGGCGGgCGCU--------------ACC-GCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 154097 | 0.66 | 0.773399 |
Target: 5'- cGAAUcuggcuuggGACCGCaaagucaCCGgGAUcGGCGGCGa -3' miRNA: 3'- aCUUG---------CUGGCG-------GGCgCUA-CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 65944 | 0.66 | 0.756318 |
Target: 5'- -cGGCGGCgGUaucgUCGCGAgcGGCGGCGUc -3' miRNA: 3'- acUUGCUGgCG----GGCGCUa-CCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 142192 | 0.66 | 0.756318 |
Target: 5'- gGAGCGGCaGUgCGgGAagcGGCGGCGg -3' miRNA: 3'- aCUUGCUGgCGgGCgCUa--CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 55163 | 0.66 | 0.756318 |
Target: 5'- cGAGuCGAgCGCCgaGCGGgcgacucgaGGCGGCGg -3' miRNA: 3'- aCUU-GCUgGCGGg-CGCUa--------CCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 43188 | 0.66 | 0.774287 |
Target: 5'- uUGcGCGcGCCGaCCGgGAaGGUGGCGUg -3' miRNA: 3'- -ACuUGC-UGGCgGGCgCUaCCGCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 194777 | 0.66 | 0.774287 |
Target: 5'- aGAACGGCCGgCaCGCGcgcaGCGGCu- -3' miRNA: 3'- aCUUGCUGGCgG-GCGCuac-CGCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 187587 | 0.66 | 0.783103 |
Target: 5'- gGcGCGGCCGCCguCGCGAcgccCGGCGUc -3' miRNA: 3'- aCuUGCUGGCGG--GCGCUacc-GCCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 29934 | 0.66 | 0.783103 |
Target: 5'- cGAGCcGCCGUCCGgGAa-GCGGCa- -3' miRNA: 3'- aCUUGcUGGCGGGCgCUacCGCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 126958 | 0.66 | 0.783103 |
Target: 5'- uUGAGCGACga-CCGCGAgagcGGCcGCGUg -3' miRNA: 3'- -ACUUGCUGgcgGGCGCUa---CCGcCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 190125 | 0.66 | 0.777827 |
Target: 5'- cGaAGCGGuCCGCgCGcCGAuaccacgcguacugcUGGCGGCGg -3' miRNA: 3'- aC-UUGCU-GGCGgGC-GCU---------------ACCGCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 124823 | 0.66 | 0.774287 |
Target: 5'- cGuGCGACCuGUCgGCGAccaucugcaUGGCGGCc- -3' miRNA: 3'- aCuUGCUGG-CGGgCGCU---------ACCGCCGca -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 66514 | 0.66 | 0.774287 |
Target: 5'- cGAGCGauagGCCGUccccggguCCGCGAaGGuCGGCGc -3' miRNA: 3'- aCUUGC----UGGCG--------GGCGCUaCC-GCCGCa -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 122765 | 0.66 | 0.774287 |
Target: 5'- cUGAuCGAgCGCuCCGCGAgcGGCcucgacGGCGUg -3' miRNA: 3'- -ACUuGCUgGCG-GGCGCUa-CCG------CCGCA- -5' |
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10895 | 5' | -60.7 | NC_002794.1 | + | 36928 | 0.66 | 0.774287 |
Target: 5'- --cGCGACCGCggaggagaaaguCCGCGucgcgcGGCGGCa- -3' miRNA: 3'- acuUGCUGGCG------------GGCGCua----CCGCCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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