miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 190732 0.67 0.728643
Target:  5'- -aGACGcAgCGCCCGCcgccgucucgacGggGGCGGCGg -3'
miRNA:   3'- acUUGC-UgGCGGGCG------------CuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 145912 0.67 0.728643
Target:  5'- gGAGuCGACCGCgCCgaGCGGaggGGCcGGCGa -3'
miRNA:   3'- aCUU-GCUGGCG-GG--CGCUa--CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 53285 0.67 0.728643
Target:  5'- nGAGCGACCacuccagguGCCgaGCGGUcGGCcGGCGc -3'
miRNA:   3'- aCUUGCUGG---------CGGg-CGCUA-CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 255 0.67 0.719257
Target:  5'- cGGACuGCCGCCgcgcgcgcggaCGCGAggacGGCGGCc- -3'
miRNA:   3'- aCUUGcUGGCGG-----------GCGCUa---CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 66843 0.67 0.727707
Target:  5'- cGGGCGccGCCGUCgGCGcgGcgaggccGCGGCGUg -3'
miRNA:   3'- aCUUGC--UGGCGGgCGCuaC-------CGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 30044 0.67 0.744422
Target:  5'- gUGAACGACCgagacccggGCCCGCGGgguccGGUcgcccggucgacgaGGCGc -3'
miRNA:   3'- -ACUUGCUGG---------CGGGCGCUa----CCG--------------CCGCa -5'
10895 5' -60.7 NC_002794.1 + 54457 0.67 0.747181
Target:  5'- aGGgcGCGACCGgacaCCUuggggaugaugGCGGUGGCGGCu- -3'
miRNA:   3'- aCU--UGCUGGC----GGG-----------CGCUACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 40315 0.66 0.774287
Target:  5'- gGGACGGuuuuccucacCCGCCgCGCGGacgcgccaccGGCGGCGc -3'
miRNA:   3'- aCUUGCU----------GGCGG-GCGCUa---------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 128158 0.66 0.765355
Target:  5'- cGAcgGCGGCuCGCgCCGCGGacgGGuCGGUGa -3'
miRNA:   3'- aCU--UGCUG-GCG-GGCGCUa--CC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 116357 0.66 0.765355
Target:  5'- --cACGGCCGCgCGguccgaccgguCGGUGGCGuGCGg -3'
miRNA:   3'- acuUGCUGGCGgGC-----------GCUACCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 98965 0.66 0.771619
Target:  5'- cUGGGCG-CCGUCgGCGGcgccguggccucggUGGuCGGCGg -3'
miRNA:   3'- -ACUUGCuGGCGGgCGCU--------------ACC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 154097 0.66 0.773399
Target:  5'- cGAAUcuggcuuggGACCGCaaagucaCCGgGAUcGGCGGCGa -3'
miRNA:   3'- aCUUG---------CUGGCG-------GGCgCUA-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 65944 0.66 0.756318
Target:  5'- -cGGCGGCgGUaucgUCGCGAgcGGCGGCGUc -3'
miRNA:   3'- acUUGCUGgCG----GGCGCUa-CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 142192 0.66 0.756318
Target:  5'- gGAGCGGCaGUgCGgGAagcGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGgGCgCUa--CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 55163 0.66 0.756318
Target:  5'- cGAGuCGAgCGCCgaGCGGgcgacucgaGGCGGCGg -3'
miRNA:   3'- aCUU-GCUgGCGGg-CGCUa--------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 185767 0.66 0.756318
Target:  5'- gGcGCGGCCGCCCGUcacacgucGGCcGGCGc -3'
miRNA:   3'- aCuUGCUGGCGGGCGcua-----CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 108436 0.67 0.747181
Target:  5'- --cGCGACCGgcggcaCUCGCGgcGGCGGCc- -3'
miRNA:   3'- acuUGCUGGC------GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 91035 0.67 0.747181
Target:  5'- cUGGGCGGCC-CUCGgGGUGGacggGGCGc -3'
miRNA:   3'- -ACUUGCUGGcGGGCgCUACCg---CCGCa -5'
10895 5' -60.7 NC_002794.1 + 75368 0.67 0.747181
Target:  5'- ---cCGACC-CgCCGCGGccGGCGGCGg -3'
miRNA:   3'- acuuGCUGGcG-GGCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 96599 0.67 0.747181
Target:  5'- -cGACGGuCCGCUcuuucuguaCGCGGgcGGCGGCGUc -3'
miRNA:   3'- acUUGCU-GGCGG---------GCGCUa-CCGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.