miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 65212 0.66 0.800362
Target:  5'- --cACGAccCCGCUCGCauuccacgGGCGGCGg -3'
miRNA:   3'- acuUGCU--GGCGGGCGcua-----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 115387 0.66 0.800362
Target:  5'- cUGAcCGcCgGCCCGUGcugcggacuccaGUGGCGGCa- -3'
miRNA:   3'- -ACUuGCuGgCGGGCGC------------UACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 115088 0.66 0.800362
Target:  5'- -cGGCGGCCGCCCGCaGccGcGCGuccGCGUc -3'
miRNA:   3'- acUUGCUGGCGGGCG-CuaC-CGC---CGCA- -5'
10895 5' -60.7 NC_002794.1 + 63480 0.66 0.800362
Target:  5'- -cGGCGGCCGCCguCGaCGAcgccGCGGCGUc -3'
miRNA:   3'- acUUGCUGGCGG--GC-GCUac--CGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 19249 0.66 0.800362
Target:  5'- aUGAugugcCGACCGgCCGCGGcccccgUGGC-GCGUc -3'
miRNA:   3'- -ACUu----GCUGGCgGGCGCU------ACCGcCGCA- -5'
10895 5' -60.7 NC_002794.1 + 117051 0.66 0.791797
Target:  5'- cGAgguACgGGCCGUCCGUGAgccucggguacGGCGGCa- -3'
miRNA:   3'- aCU---UG-CUGGCGGGCGCUa----------CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 51217 0.66 0.791797
Target:  5'- gGAGCGGCCGgCCGgcCGAUGGgaaaCGGUc- -3'
miRNA:   3'- aCUUGCUGGCgGGC--GCUACC----GCCGca -5'
10895 5' -60.7 NC_002794.1 + 36928 0.66 0.774287
Target:  5'- --cGCGACCGCggaggagaaaguCCGCGucgcgcGGCGGCa- -3'
miRNA:   3'- acuUGCUGGCG------------GGCGCua----CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 122765 0.66 0.774287
Target:  5'- cUGAuCGAgCGCuCCGCGAgcGGCcucgacGGCGUg -3'
miRNA:   3'- -ACUuGCUgGCG-GGCGCUa-CCG------CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 66514 0.66 0.774287
Target:  5'- cGAGCGauagGCCGUccccggguCCGCGAaGGuCGGCGc -3'
miRNA:   3'- aCUUGC----UGGCG--------GGCGCUaCC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 124823 0.66 0.774287
Target:  5'- cGuGCGACCuGUCgGCGAccaucugcaUGGCGGCc- -3'
miRNA:   3'- aCuUGCUGG-CGGgCGCU---------ACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 190125 0.66 0.777827
Target:  5'- cGaAGCGGuCCGCgCGcCGAuaccacgcguacugcUGGCGGCGg -3'
miRNA:   3'- aC-UUGCU-GGCGgGC-GCU---------------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 126958 0.66 0.783103
Target:  5'- uUGAGCGACga-CCGCGAgagcGGCcGCGUg -3'
miRNA:   3'- -ACUUGCUGgcgGGCGCUa---CCGcCGCA- -5'
10895 5' -60.7 NC_002794.1 + 29934 0.66 0.783103
Target:  5'- cGAGCcGCCGUCCGgGAa-GCGGCa- -3'
miRNA:   3'- aCUUGcUGGCGGGCgCUacCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 187587 0.66 0.783103
Target:  5'- gGcGCGGCCGCCguCGCGAcgccCGGCGUc -3'
miRNA:   3'- aCuUGCUGGCGG--GCGCUacc-GCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 63425 0.66 0.783103
Target:  5'- cGGACGAUgagCGCCCGacaccaccaCGGccgcGGCGGCGa -3'
miRNA:   3'- aCUUGCUG---GCGGGC---------GCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 148132 0.66 0.783103
Target:  5'- cGGGCGcgggGCCGCCgggGCGAgGGCGGUc- -3'
miRNA:   3'- aCUUGC----UGGCGGg--CGCUaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 49573 0.66 0.786596
Target:  5'- cGAACGACCGgUcgaccggaucccgauCGCGAUcGGCgacGGCGg -3'
miRNA:   3'- aCUUGCUGGCgG---------------GCGCUA-CCG---CCGCa -5'
10895 5' -60.7 NC_002794.1 + 35972 0.66 0.789202
Target:  5'- cGGACGGgcCCGCUCGCGGacccgguuuuaUugucgcggggcucgGGCGGCGg -3'
miRNA:   3'- aCUUGCU--GGCGGGCGCU-----------A--------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 91836 0.66 0.789202
Target:  5'- cUGAACGAcgccugucgcaCCGucaaguucgaggguCCCgGgGGUGGCGGCGg -3'
miRNA:   3'- -ACUUGCU-----------GGC--------------GGG-CgCUACCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.