Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10896 | 3' | -58.4 | NC_002794.1 | + | 15061 | 1.04 | 0.004336 |
Target: 5'- cAUCGGUCUCGGCCUCUACCGCGACUAc -3' miRNA: 3'- -UAGCCAGAGCCGGAGAUGGCGCUGAU- -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 86840 | 0.76 | 0.304367 |
Target: 5'- gAUCgGGUCggCGGCCccgccgggauugggUCUGCCGCGGCUAg -3' miRNA: 3'- -UAG-CCAGa-GCCGG--------------AGAUGGCGCUGAU- -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 104414 | 0.73 | 0.458533 |
Target: 5'- -gCGGcCUCGGCCUCgGCCGcCGGCc- -3' miRNA: 3'- uaGCCaGAGCCGGAGaUGGC-GCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 180892 | 0.72 | 0.504822 |
Target: 5'- -cCGGUCUCGGCCgcggaCUcgGCCGCGGuCUc -3' miRNA: 3'- uaGCCAGAGCCGGa----GA--UGGCGCU-GAu -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 701 | 0.7 | 0.642472 |
Target: 5'- aGUCGGcuguuUUUgGGCCUCU-CCGCGACc- -3' miRNA: 3'- -UAGCC-----AGAgCCGGAGAuGGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 140293 | 0.7 | 0.652469 |
Target: 5'- uUUGGgccUCUCGGCCaaggcCUGCCGgCGGCUGg -3' miRNA: 3'- uAGCC---AGAGCCGGa----GAUGGC-GCUGAU- -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 73296 | 0.7 | 0.652469 |
Target: 5'- -cCGGUCUCGGaaCCga-ACCGCGACg- -3' miRNA: 3'- uaGCCAGAGCC--GGagaUGGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 59197 | 0.69 | 0.66245 |
Target: 5'- -gCGGUCgacgcgcacgUCGGCgUCUcgGCCGCGGCg- -3' miRNA: 3'- uaGCCAG----------AGCCGgAGA--UGGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 34099 | 0.69 | 0.672407 |
Target: 5'- cGUCGGg--CGGCCcggACCGCGACg- -3' miRNA: 3'- -UAGCCagaGCCGGagaUGGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 21442 | 0.69 | 0.672407 |
Target: 5'- cGUCGGUCucgcgucgcUCGGCgUC-GCCGUGACg- -3' miRNA: 3'- -UAGCCAG---------AGCCGgAGaUGGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 182442 | 0.69 | 0.702059 |
Target: 5'- -gCGGaUCUCGGUCUCggagAgCGCGGCg- -3' miRNA: 3'- uaGCC-AGAGCCGGAGa---UgGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 189846 | 0.69 | 0.711841 |
Target: 5'- --gGGUCUCGGCCgCggaGCCGuCGGCg- -3' miRNA: 3'- uagCCAGAGCCGGaGa--UGGC-GCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 80371 | 0.68 | 0.721559 |
Target: 5'- -cCGGgccCagGGCCUCacccGCCGCGACUAc -3' miRNA: 3'- uaGCCa--GagCCGGAGa---UGGCGCUGAU- -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 121491 | 0.68 | 0.731203 |
Target: 5'- uUCGGaCgCGGCCUCcGCCGgGGCg- -3' miRNA: 3'- uAGCCaGaGCCGGAGaUGGCgCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 130369 | 0.68 | 0.740766 |
Target: 5'- -aCGGUCUCcGCCUCaACCGCugaggccgccuGGCUGu -3' miRNA: 3'- uaGCCAGAGcCGGAGaUGGCG-----------CUGAU- -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 98639 | 0.68 | 0.750237 |
Target: 5'- -gCGGggaaggUGGCCUacgaaUACCGCGACUAu -3' miRNA: 3'- uaGCCaga---GCCGGAg----AUGGCGCUGAU- -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 154330 | 0.68 | 0.762401 |
Target: 5'- cGUCGGUCgucccgggugccgCGGCCgagCUcccgcgcgguccagGCCGCGGCg- -3' miRNA: 3'- -UAGCCAGa------------GCCGGa--GA--------------UGGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 70651 | 0.67 | 0.765182 |
Target: 5'- --aGGuUCUUGGCCUCgugcgcggcggccGCCGCGGCg- -3' miRNA: 3'- uagCC-AGAGCCGGAGa------------UGGCGCUGau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 62279 | 0.67 | 0.768874 |
Target: 5'- -cCGGagCUCGGCCUgCUGCCGCu---- -3' miRNA: 3'- uaGCCa-GAGCCGGA-GAUGGCGcugau -5' |
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10896 | 3' | -58.4 | NC_002794.1 | + | 85514 | 0.67 | 0.768874 |
Target: 5'- --aGGccccUUUCGGCCUCgccCCGCGGCUc -3' miRNA: 3'- uagCC----AGAGCCGGAGau-GGCGCUGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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