miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10896 5' -59.9 NC_002794.1 + 122336 0.66 0.854164
Target:  5'- gUUGGcCCUGGC-CGuCCGGAGcACCGAg -3'
miRNA:   3'- gAGCUaGGGCUGcGC-GGCCUC-UGGCU- -5'
10896 5' -59.9 NC_002794.1 + 102066 0.66 0.854164
Target:  5'- uUCGAgCCgGGCGaccuGCCGcGGGCCGAc -3'
miRNA:   3'- gAGCUaGGgCUGCg---CGGCcUCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 179928 0.66 0.854164
Target:  5'- -aCGGUUUCGaagacgacgucGCGgGCCGGGGAgCGAg -3'
miRNA:   3'- gaGCUAGGGC-----------UGCgCGGCCUCUgGCU- -5'
10896 5' -59.9 NC_002794.1 + 118244 0.66 0.854164
Target:  5'- --gGAUgUCGGCGgGCUGGAGgucgGCCGGg -3'
miRNA:   3'- gagCUAgGGCUGCgCGGCCUC----UGGCU- -5'
10896 5' -59.9 NC_002794.1 + 6374 0.66 0.854164
Target:  5'- -gCGGUCCCuGGCccuGCGCCGGGaacuGCUGAu -3'
miRNA:   3'- gaGCUAGGG-CUG---CGCGGCCUc---UGGCU- -5'
10896 5' -59.9 NC_002794.1 + 19333 0.66 0.846708
Target:  5'- -gCGA-CCCG-CGCGCCGGucACCc- -3'
miRNA:   3'- gaGCUaGGGCuGCGCGGCCucUGGcu -5'
10896 5' -59.9 NC_002794.1 + 193814 0.66 0.846708
Target:  5'- gCUCGucuggCgCCGACGCGUCGcGGcGCCGGc -3'
miRNA:   3'- -GAGCua---G-GGCUGCGCGGC-CUcUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 188353 0.66 0.846708
Target:  5'- gUCGcgCCCGucCG-GCCGGcggcGGCCGAg -3'
miRNA:   3'- gAGCuaGGGCu-GCgCGGCCu---CUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 180877 0.66 0.846708
Target:  5'- -gCGGaUCCGGCGCGCCcGGucucGGCCGc -3'
miRNA:   3'- gaGCUaGGGCUGCGCGG-CCu---CUGGCu -5'
10896 5' -59.9 NC_002794.1 + 95591 0.66 0.846708
Target:  5'- gCUCGAUCUacGCgGCGCCGGAGcgcAUCGu -3'
miRNA:   3'- -GAGCUAGGgcUG-CGCGGCCUC---UGGCu -5'
10896 5' -59.9 NC_002794.1 + 193655 0.66 0.846708
Target:  5'- gUCGGcUCCGGCGCGCCccgacccccacGAGuCCGAg -3'
miRNA:   3'- gAGCUaGGGCUGCGCGGc----------CUCuGGCU- -5'
10896 5' -59.9 NC_002794.1 + 87011 0.66 0.839851
Target:  5'- gUgGGUUCCGGCGaggguccgcaggauCCGGGGACCGGc -3'
miRNA:   3'- gAgCUAGGGCUGCgc------------GGCCUCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 77038 0.66 0.83908
Target:  5'- gCUCG-UCCCcgcuCGUGCCGcGGACCGc -3'
miRNA:   3'- -GAGCuAGGGcu--GCGCGGCcUCUGGCu -5'
10896 5' -59.9 NC_002794.1 + 38709 0.66 0.83908
Target:  5'- gUCGAgcgcCCCGGC-CGCCgaaauGGGGACCu- -3'
miRNA:   3'- gAGCUa---GGGCUGcGCGG-----CCUCUGGcu -5'
10896 5' -59.9 NC_002794.1 + 124384 0.66 0.838308
Target:  5'- cCUCGGUCgCGGCGgcgcgucgccgguCGUCGGGGcGCCGu -3'
miRNA:   3'- -GAGCUAGgGCUGC-------------GCGGCCUC-UGGCu -5'
10896 5' -59.9 NC_002794.1 + 192267 0.66 0.838308
Target:  5'- gCUCGucUCUCGcgacgacACGCGacCCGGAGACCa- -3'
miRNA:   3'- -GAGCu-AGGGC-------UGCGC--GGCCUCUGGcu -5'
10896 5' -59.9 NC_002794.1 + 189562 0.66 0.831285
Target:  5'- -gCGGUCCCGcucgguCG-GCCGGcccGGGCCGGc -3'
miRNA:   3'- gaGCUAGGGCu-----GCgCGGCC---UCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 115610 0.66 0.831285
Target:  5'- gCUCG--CCCGGCGC-CgGGAGGCgGGu -3'
miRNA:   3'- -GAGCuaGGGCUGCGcGgCCUCUGgCU- -5'
10896 5' -59.9 NC_002794.1 + 82574 0.66 0.823328
Target:  5'- -gCGAggCCGACGcCGCCgagacGGAGACCc- -3'
miRNA:   3'- gaGCUagGGCUGC-GCGG-----CCUCUGGcu -5'
10896 5' -59.9 NC_002794.1 + 117205 0.66 0.823328
Target:  5'- gUCGggCCCGGgcggcuccggcCGCGUCaGGGcGACCGAc -3'
miRNA:   3'- gAGCuaGGGCU-----------GCGCGG-CCU-CUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.