miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10896 5' -59.9 NC_002794.1 + 288 0.66 0.823328
Target:  5'- -gCGGcCCUGGCGCGCCGaacGCCGGg -3'
miRNA:   3'- gaGCUaGGGCUGCGCGGCcucUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 6374 0.66 0.854164
Target:  5'- -gCGGUCCCuGGCccuGCGCCGGGaacuGCUGAu -3'
miRNA:   3'- gaGCUAGGG-CUG---CGCGGCCUc---UGGCU- -5'
10896 5' -59.9 NC_002794.1 + 11504 0.66 0.81848
Target:  5'- uCUgGAUCCCGAUgaacgugacgaucgaGCuGCgGGcGACCGAg -3'
miRNA:   3'- -GAgCUAGGGCUG---------------CG-CGgCCuCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 14547 0.69 0.689477
Target:  5'- uCUCGccCCCgucGACGCGCgGGAGgcgaGCCGGc -3'
miRNA:   3'- -GAGCuaGGG---CUGCGCGgCCUC----UGGCU- -5'
10896 5' -59.9 NC_002794.1 + 14734 0.74 0.412756
Target:  5'- gCUCGGggUCCGGCGCGUcauCGGAGcCCGAa -3'
miRNA:   3'- -GAGCUa-GGGCUGCGCG---GCCUCuGGCU- -5'
10896 5' -59.9 NC_002794.1 + 14928 0.69 0.698982
Target:  5'- -gCGGUCCCGACGUGCUcucGAUCGGc -3'
miRNA:   3'- gaGCUAGGGCUGCGCGGccuCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 15102 1.08 0.002519
Target:  5'- gCUCGAUCCCGACGCGCCGGAGACCGAc -3'
miRNA:   3'- -GAGCUAGGGCUGCGCGGCCUCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 17496 0.69 0.651105
Target:  5'- -gCGAUCgCCGACGCcgGCCG-AGAUCGGc -3'
miRNA:   3'- gaGCUAG-GGCUGCG--CGGCcUCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 18827 0.69 0.651105
Target:  5'- cCUCGG--CCGGCGCGgaGGAGACCu- -3'
miRNA:   3'- -GAGCUagGGCUGCGCggCCUCUGGcu -5'
10896 5' -59.9 NC_002794.1 + 19333 0.66 0.846708
Target:  5'- -gCGA-CCCG-CGCGCCGGucACCc- -3'
miRNA:   3'- gaGCUaGGGCuGCGCGGCCucUGGcu -5'
10896 5' -59.9 NC_002794.1 + 27225 0.67 0.798558
Target:  5'- uUC-AUCCCGACacCGauGGAGGCCGAc -3'
miRNA:   3'- gAGcUAGGGCUGc-GCggCCUCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 27473 0.71 0.564613
Target:  5'- gCUCGAcucgUCUCGuCGCGCCG-AGGCCGc -3'
miRNA:   3'- -GAGCU----AGGGCuGCGCGGCcUCUGGCu -5'
10896 5' -59.9 NC_002794.1 + 30937 0.67 0.781364
Target:  5'- -cUGcgCCCGcCGCGCCGcGAGACa-- -3'
miRNA:   3'- gaGCuaGGGCuGCGCGGC-CUCUGgcu -5'
10896 5' -59.9 NC_002794.1 + 32500 0.67 0.772584
Target:  5'- gCUCGAcgucuugccggcUCCCGcCGUGCCGGugaugagcaAGACgCGGa -3'
miRNA:   3'- -GAGCU------------AGGGCuGCGCGGCC---------UCUG-GCU- -5'
10896 5' -59.9 NC_002794.1 + 32575 0.69 0.679929
Target:  5'- gUCGcgCgCGGCgGUGCCGG-GGCCGGg -3'
miRNA:   3'- gAGCuaGgGCUG-CGCGGCCuCUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 36342 0.7 0.602885
Target:  5'- gUCGAgcaaCCCGGCGUGCgCGGccACCGGg -3'
miRNA:   3'- gAGCUa---GGGCUGCGCG-GCCucUGGCU- -5'
10896 5' -59.9 NC_002794.1 + 36657 0.66 0.814398
Target:  5'- -cCGAUCCCGAaagaguuUGCGCCaGuAGcaGCCGAa -3'
miRNA:   3'- gaGCUAGGGCU-------GCGCGGcC-UC--UGGCU- -5'
10896 5' -59.9 NC_002794.1 + 38622 0.67 0.790024
Target:  5'- -gCGcGUCCCGACuCGCCGGugcGGCgCGAc -3'
miRNA:   3'- gaGC-UAGGGCUGcGCGGCCu--CUG-GCU- -5'
10896 5' -59.9 NC_002794.1 + 38709 0.66 0.83908
Target:  5'- gUCGAgcgcCCCGGC-CGCCgaaauGGGGACCu- -3'
miRNA:   3'- gAGCUa---GGGCUGcGCGG-----CCUCUGGcu -5'
10896 5' -59.9 NC_002794.1 + 40508 0.72 0.49038
Target:  5'- gCUCGAgucacggcCgCCGACGCGCCgacgggagacgaGGGGGCCGGc -3'
miRNA:   3'- -GAGCUa-------G-GGCUGCGCGG------------CCUCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.