miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10897 3' -54.2 NC_002794.1 + 81558 0.66 0.977217
Target:  5'- uGCCgccgccgcCGCC-GCCGCgCCGGa -3'
miRNA:   3'- uCGGauaaauauGCGGuCGGCG-GGCC- -5'
10897 3' -54.2 NC_002794.1 + 80203 0.66 0.977217
Target:  5'- cGCCUGggcggucgacgACGCCucGCCGCacaCCGGc -3'
miRNA:   3'- uCGGAUaaaua------UGCGGu-CGGCG---GGCC- -5'
10897 3' -54.2 NC_002794.1 + 114494 0.66 0.976978
Target:  5'- cGGUCcacgc--GCGCCGGaCCGuCCCGGa -3'
miRNA:   3'- -UCGGauaaauaUGCGGUC-GGC-GGGCC- -5'
10897 3' -54.2 NC_002794.1 + 79324 0.66 0.976978
Target:  5'- cGGCCUAccuga--GUCagGGCCGCCCGa -3'
miRNA:   3'- -UCGGAUaaauaugCGG--UCGGCGGGCc -5'
10897 3' -54.2 NC_002794.1 + 17898 0.66 0.976978
Target:  5'- gAGCCUGUUgaccgGCGuCCGGCaGCUCa- -3'
miRNA:   3'- -UCGGAUAAaua--UGC-GGUCGgCGGGcc -5'
10897 3' -54.2 NC_002794.1 + 14636 0.66 0.976247
Target:  5'- gGGCCgggcacggagACGCCGGC-GCCgCGGc -3'
miRNA:   3'- -UCGGauaaaua---UGCGGUCGgCGG-GCC- -5'
10897 3' -54.2 NC_002794.1 + 124404 0.66 0.976247
Target:  5'- cGCCggucgucgggGCGCCGuCCGCCgCGGu -3'
miRNA:   3'- uCGGauaaaua---UGCGGUcGGCGG-GCC- -5'
10897 3' -54.2 NC_002794.1 + 144032 0.66 0.974735
Target:  5'- gAGCCguaucuccgGCGCCuGGCCGCCg-- -3'
miRNA:   3'- -UCGGauaaaua--UGCGG-UCGGCGGgcc -5'
10897 3' -54.2 NC_002794.1 + 134318 0.66 0.974477
Target:  5'- cGCCUc-----GCGCCGGaucucccgaccuUCGCCCGGa -3'
miRNA:   3'- uCGGAuaaauaUGCGGUC------------GGCGGGCC- -5'
10897 3' -54.2 NC_002794.1 + 34654 0.66 0.974477
Target:  5'- uGGCCUAc----GCGCgCAGCCgGCUCGa -3'
miRNA:   3'- -UCGGAUaaauaUGCG-GUCGG-CGGGCc -5'
10897 3' -54.2 NC_002794.1 + 195544 0.66 0.973954
Target:  5'- cGCCgcaccc-ACGCCcugAGCCGCCCc- -3'
miRNA:   3'- uCGGauaaauaUGCGG---UCGGCGGGcc -5'
10897 3' -54.2 NC_002794.1 + 30099 0.66 0.973423
Target:  5'- cGGCCggucccgAC-CCA-CCGCCCGGg -3'
miRNA:   3'- -UCGGauaaauaUGcGGUcGGCGGGCC- -5'
10897 3' -54.2 NC_002794.1 + 104431 0.66 0.973423
Target:  5'- cGCCggcccggACGCCgccgcgggcGGCCcgaGCCCGGg -3'
miRNA:   3'- uCGGauaaauaUGCGG---------UCGG---CGGGCC- -5'
10897 3' -54.2 NC_002794.1 + 183727 0.66 0.971784
Target:  5'- cAGCCcgcac--GCGCCcagcaggaucaGGCCGCCCGc -3'
miRNA:   3'- -UCGGauaaauaUGCGG-----------UCGGCGGGCc -5'
10897 3' -54.2 NC_002794.1 + 194817 0.66 0.970938
Target:  5'- cAGCCgcagcgacgcGCGCUcGCgGCCCGGc -3'
miRNA:   3'- -UCGGauaaaua---UGCGGuCGgCGGGCC- -5'
10897 3' -54.2 NC_002794.1 + 82401 0.66 0.970652
Target:  5'- cGCCcacaaacACGCUcGCCGCCCGu -3'
miRNA:   3'- uCGGauaaauaUGCGGuCGGCGGGCc -5'
10897 3' -54.2 NC_002794.1 + 145538 0.66 0.968892
Target:  5'- cGCCUcgg---GCGCCccgAGCgGCCCGa -3'
miRNA:   3'- uCGGAuaaauaUGCGG---UCGgCGGGCc -5'
10897 3' -54.2 NC_002794.1 + 82674 0.66 0.968892
Target:  5'- cGCCggcggAUcgcACGCCGuUCGCCCGGc -3'
miRNA:   3'- uCGGauaaaUA---UGCGGUcGGCGGGCC- -5'
10897 3' -54.2 NC_002794.1 + 124243 0.66 0.968592
Target:  5'- cGCCUGUUccccgcgcgcgggUAgucGCcgGCCAGCCGCCgCGc -3'
miRNA:   3'- uCGGAUAA-------------AUa--UG--CGGUCGGCGG-GCc -5'
10897 3' -54.2 NC_002794.1 + 149219 0.66 0.966115
Target:  5'- uGGCCggaagcgagGCGCCGccGCCGUcgCCGGg -3'
miRNA:   3'- -UCGGauaaaua--UGCGGU--CGGCG--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.