miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10897 5' -58.6 NC_002794.1 + 113851 0.66 0.869197
Target:  5'- cAGCCuGGcgugcaguuCCGGCCaggCGCGCUCGGc -3'
miRNA:   3'- -UCGGcUCu--------GGCUGGaa-GCGCGAGCUa -5'
10897 5' -58.6 NC_002794.1 + 37996 0.66 0.869197
Target:  5'- cAGCCGGGccacGCCGuagGCCUgcaGCGCUuCGGg -3'
miRNA:   3'- -UCGGCUC----UGGC---UGGAag-CGCGA-GCUa -5'
10897 5' -58.6 NC_002794.1 + 22618 0.66 0.869197
Target:  5'- gAGCCGAucgGGCCGcUCgagGCGCUCGGa -3'
miRNA:   3'- -UCGGCU---CUGGCuGGaagCGCGAGCUa -5'
10897 5' -58.6 NC_002794.1 + 12181 0.66 0.869197
Target:  5'- cGCCGAcGCCGccgcgGCCgggCGCcGCUCGGa -3'
miRNA:   3'- uCGGCUcUGGC-----UGGaa-GCG-CGAGCUa -5'
10897 5' -58.6 NC_002794.1 + 48044 0.66 0.869197
Target:  5'- cGCCGAGugCGugCUgggcacgGCGCU-GAUg -3'
miRNA:   3'- uCGGCUCugGCugGAag-----CGCGAgCUA- -5'
10897 5' -58.6 NC_002794.1 + 154262 0.66 0.868478
Target:  5'- uGGaCCGGGGucuggucCCGACCgccggCGCgGCUCGAc -3'
miRNA:   3'- -UC-GGCUCU-------GGCUGGaa---GCG-CGAGCUa -5'
10897 5' -58.6 NC_002794.1 + 88884 0.66 0.861922
Target:  5'- cGuuGgcGGAUCGuCCUaugCGCGCUCGAg -3'
miRNA:   3'- uCggC--UCUGGCuGGAa--GCGCGAGCUa -5'
10897 5' -58.6 NC_002794.1 + 25119 0.66 0.861922
Target:  5'- cGGUCGAGAUCGAgCggggcacgCGCGCaCGGUa -3'
miRNA:   3'- -UCGGCUCUGGCUgGaa------GCGCGaGCUA- -5'
10897 5' -58.6 NC_002794.1 + 25314 0.66 0.861922
Target:  5'- -cUCGAGuCCGACCgggccuaUCGCGCUCc-- -3'
miRNA:   3'- ucGGCUCuGGCUGGa------AGCGCGAGcua -5'
10897 5' -58.6 NC_002794.1 + 58438 0.66 0.861922
Target:  5'- cGCCGAGGCCacgcugcGCCUggcCGCGCUgGc- -3'
miRNA:   3'- uCGGCUCUGGc------UGGAa--GCGCGAgCua -5'
10897 5' -58.6 NC_002794.1 + 65176 0.66 0.861922
Target:  5'- cGCCGAGACCGGCgg--GUGCcggCGAg -3'
miRNA:   3'- uCGGCUCUGGCUGgaagCGCGa--GCUa -5'
10897 5' -58.6 NC_002794.1 + 98950 0.66 0.861922
Target:  5'- gGGCUGGGGCuCGugCUggGCGCcgUCGGc -3'
miRNA:   3'- -UCGGCUCUG-GCugGAagCGCG--AGCUa -5'
10897 5' -58.6 NC_002794.1 + 108212 0.66 0.861922
Target:  5'- cGCCGc-GCCGGCC-UCGCGCccugCGGc -3'
miRNA:   3'- uCGGCucUGGCUGGaAGCGCGa---GCUa -5'
10897 5' -58.6 NC_002794.1 + 76242 0.66 0.861922
Target:  5'- cGCCGGGACCcACCUccgUCGagaCGCUCu-- -3'
miRNA:   3'- uCGGCUCUGGcUGGA---AGC---GCGAGcua -5'
10897 5' -58.6 NC_002794.1 + 79843 0.66 0.861922
Target:  5'- cGCCGAGAUCGACaaaUUC-CGCgaaGAg -3'
miRNA:   3'- uCGGCUCUGGCUGg--AAGcGCGag-CUa -5'
10897 5' -58.6 NC_002794.1 + 47963 0.66 0.854452
Target:  5'- cGCCGGcuGGgCGACCgccgCGCGCUCc-- -3'
miRNA:   3'- uCGGCU--CUgGCUGGaa--GCGCGAGcua -5'
10897 5' -58.6 NC_002794.1 + 137425 0.66 0.854452
Target:  5'- cGCgGAGACCGcGCCg--GCGCUCu-- -3'
miRNA:   3'- uCGgCUCUGGC-UGGaagCGCGAGcua -5'
10897 5' -58.6 NC_002794.1 + 68493 0.66 0.854452
Target:  5'- cGGCCGAG-CCGGCCgu-GCGggUGAUc -3'
miRNA:   3'- -UCGGCUCuGGCUGGaagCGCgaGCUA- -5'
10897 5' -58.6 NC_002794.1 + 124556 0.66 0.854452
Target:  5'- aAGCCGuacaAGGCCG-CCaUCcagcagcuGCGCUCGAUc -3'
miRNA:   3'- -UCGGC----UCUGGCuGGaAG--------CGCGAGCUA- -5'
10897 5' -58.6 NC_002794.1 + 86383 0.66 0.854452
Target:  5'- gAGCCGGGACgGAugcuCCgggcCGCGCcCGAc -3'
miRNA:   3'- -UCGGCUCUGgCU----GGaa--GCGCGaGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.