miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10898 3' -59.4 NC_002794.1 + 64852 0.65 0.837185
Target:  5'- cGCGGCgGCAcCUCGACGUgccgcucGACGaGGa -3'
miRNA:   3'- aCGCCGaCGUuGGGUUGCG-------CUGC-CCa -5'
10898 3' -59.4 NC_002794.1 + 148523 0.65 0.837185
Target:  5'- aGCGGCUGCGccgcuuCCCGugccucgucggcuGCGCG-CGGc- -3'
miRNA:   3'- aCGCCGACGUu-----GGGU-------------UGCGCuGCCca -5'
10898 3' -59.4 NC_002794.1 + 102156 0.66 0.829967
Target:  5'- gGCGGCgUGCGcGCCgGggccaucguggcGCGCGGCGaGGa -3'
miRNA:   3'- aCGCCG-ACGU-UGGgU------------UGCGCUGC-CCa -5'
10898 3' -59.4 NC_002794.1 + 94149 0.66 0.829967
Target:  5'- cGCGGCgGC-GCUgGACG-GugGGGg -3'
miRNA:   3'- aCGCCGaCGuUGGgUUGCgCugCCCa -5'
10898 3' -59.4 NC_002794.1 + 182177 0.66 0.821788
Target:  5'- aGCGGCUGUAccauaacgggGCCuCGGCGcCGgcgucgcgccACGGGg -3'
miRNA:   3'- aCGCCGACGU----------UGG-GUUGC-GC----------UGCCCa -5'
10898 3' -59.4 NC_002794.1 + 33682 0.66 0.821788
Target:  5'- cUGCGcucGCUGC-GCCUguuCGUGGCGGGc -3'
miRNA:   3'- -ACGC---CGACGuUGGGuu-GCGCUGCCCa -5'
10898 3' -59.4 NC_002794.1 + 32305 0.66 0.821788
Target:  5'- cGCGGCgGCcGCgCCGGcCGCGGCcGGa -3'
miRNA:   3'- aCGCCGaCGuUG-GGUU-GCGCUGcCCa -5'
10898 3' -59.4 NC_002794.1 + 145116 0.66 0.821788
Target:  5'- cGCGGUgucgggGCAGCUC-AUGCuGCGGGc -3'
miRNA:   3'- aCGCCGa-----CGUUGGGuUGCGcUGCCCa -5'
10898 3' -59.4 NC_002794.1 + 89213 0.66 0.821788
Target:  5'- aGCGGCgaagggaGCcGCCCGugcacauugaACuCGGCGGGUa -3'
miRNA:   3'- aCGCCGa------CGuUGGGU----------UGcGCUGCCCA- -5'
10898 3' -59.4 NC_002794.1 + 63455 0.66 0.821788
Target:  5'- cGCGGCgGCGACgaugacgaCGAgGCGGCGGc- -3'
miRNA:   3'- aCGCCGaCGUUGg-------GUUgCGCUGCCca -5'
10898 3' -59.4 NC_002794.1 + 141430 0.66 0.821788
Target:  5'- gGCGGCggggGC-GCCgGGgGCGcCGGGa -3'
miRNA:   3'- aCGCCGa---CGuUGGgUUgCGCuGCCCa -5'
10898 3' -59.4 NC_002794.1 + 106313 0.66 0.821788
Target:  5'- cGaCGaGC-GCGACgC-GCGCGACGGGUc -3'
miRNA:   3'- aC-GC-CGaCGUUGgGuUGCGCUGCCCA- -5'
10898 3' -59.4 NC_002794.1 + 94202 0.66 0.813448
Target:  5'- aGCGGUUGC-GCUUgugacgguGGCgGCGACGGGc -3'
miRNA:   3'- aCGCCGACGuUGGG--------UUG-CGCUGCCCa -5'
10898 3' -59.4 NC_002794.1 + 17253 0.66 0.813448
Target:  5'- cGaCGGCgGCGACCCGGCuCGucaccCGGGc -3'
miRNA:   3'- aC-GCCGaCGUUGGGUUGcGCu----GCCCa -5'
10898 3' -59.4 NC_002794.1 + 105908 0.66 0.813448
Target:  5'- cGCGGCgGCGGCgCUAcCGCcgccgccgGACGGGc -3'
miRNA:   3'- aCGCCGaCGUUG-GGUuGCG--------CUGCCCa -5'
10898 3' -59.4 NC_002794.1 + 86975 0.66 0.813448
Target:  5'- gGCGaGCUGCGACgagguCCGGCGgcuuuCGGCGGcGUg -3'
miRNA:   3'- aCGC-CGACGUUG-----GGUUGC-----GCUGCC-CA- -5'
10898 3' -59.4 NC_002794.1 + 45022 0.66 0.813448
Target:  5'- cGUGGCcgggUGCuccgcACCCAGCGCGGUGGcGa -3'
miRNA:   3'- aCGCCG----ACGu----UGGGUUGCGCUGCC-Ca -5'
10898 3' -59.4 NC_002794.1 + 110246 0.66 0.813448
Target:  5'- cGCGGCggagGUuuCCCGcgcggcguCGCGACGGcGg -3'
miRNA:   3'- aCGCCGa---CGuuGGGUu-------GCGCUGCC-Ca -5'
10898 3' -59.4 NC_002794.1 + 145887 0.66 0.813448
Target:  5'- cGCGaGaaGCGG-CgAGCGCGACGGGg -3'
miRNA:   3'- aCGC-CgaCGUUgGgUUGCGCUGCCCa -5'
10898 3' -59.4 NC_002794.1 + 11859 0.66 0.804954
Target:  5'- cGcCGGCgacGaCcGCCCGcccCGCGACGGGUc -3'
miRNA:   3'- aC-GCCGa--C-GuUGGGUu--GCGCUGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.