miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10898 5' -54 NC_002794.1 + 31051 0.66 0.977497
Target:  5'- aGGGCagcGgcACGgcggcCAGCUCGCGCaGCa -3'
miRNA:   3'- aCUCGa--CauUGCa----GUCGAGCGUG-CGc -5'
10898 5' -54 NC_002794.1 + 112544 0.66 0.977497
Target:  5'- aGuAGCgGUAGCGg-GGCUCGC-CGCc -3'
miRNA:   3'- aC-UCGaCAUUGCagUCGAGCGuGCGc -5'
10898 5' -54 NC_002794.1 + 92983 0.66 0.977018
Target:  5'- gGGGCUGcc-CGUCAGCguguucuucaagCGCgACGUGg -3'
miRNA:   3'- aCUCGACauuGCAGUCGa-----------GCG-UGCGC- -5'
10898 5' -54 NC_002794.1 + 150769 0.66 0.975028
Target:  5'- cGAGCUcGUcguCGUCgGGCUCGUGCGa- -3'
miRNA:   3'- aCUCGA-CAuu-GCAG-UCGAGCGUGCgc -5'
10898 5' -54 NC_002794.1 + 13121 0.66 0.975028
Target:  5'- gGGGUcGccGCG-CGGCUCGCucGCGCGg -3'
miRNA:   3'- aCUCGaCauUGCaGUCGAGCG--UGCGC- -5'
10898 5' -54 NC_002794.1 + 116810 0.66 0.97425
Target:  5'- cGGGCgccGUAGCG-CGGgUCGCucuggucccgggacGCGCGg -3'
miRNA:   3'- aCUCGa--CAUUGCaGUCgAGCG--------------UGCGC- -5'
10898 5' -54 NC_002794.1 + 16239 0.66 0.973455
Target:  5'- cGGGCUGgcACGUCcccGCcgaguacucguucgaUCGCGcCGCGc -3'
miRNA:   3'- aCUCGACauUGCAGu--CG---------------AGCGU-GCGC- -5'
10898 5' -54 NC_002794.1 + 58660 0.66 0.972367
Target:  5'- cGGGCUGcuGCaGcCGGCcgUGCACGCGc -3'
miRNA:   3'- aCUCGACauUG-CaGUCGa-GCGUGCGC- -5'
10898 5' -54 NC_002794.1 + 79957 0.66 0.972367
Target:  5'- cGAGCUcGUGGCGUacgaccccCGGCUCG-GCGaCGa -3'
miRNA:   3'- aCUCGA-CAUUGCA--------GUCGAGCgUGC-GC- -5'
10898 5' -54 NC_002794.1 + 188272 0.66 0.972367
Target:  5'- cGGGCcggGUAGCGgaugCAGggCGcCGCGCGc -3'
miRNA:   3'- aCUCGa--CAUUGCa---GUCgaGC-GUGCGC- -5'
10898 5' -54 NC_002794.1 + 147384 0.66 0.970675
Target:  5'- cGAGCUGcAGCugaUCGGCUCGauccgccacgagcgcUACGCGu -3'
miRNA:   3'- aCUCGACaUUGc--AGUCGAGC---------------GUGCGC- -5'
10898 5' -54 NC_002794.1 + 187931 0.66 0.969507
Target:  5'- --cGCgaccGUcGCGUCAcGCgugCGCGCGCGa -3'
miRNA:   3'- acuCGa---CAuUGCAGU-CGa--GCGUGCGC- -5'
10898 5' -54 NC_002794.1 + 128148 0.66 0.969507
Target:  5'- aGaAGCgacGcGACGgCGGCUCGCGcCGCGg -3'
miRNA:   3'- aC-UCGa--CaUUGCaGUCGAGCGU-GCGC- -5'
10898 5' -54 NC_002794.1 + 104650 0.66 0.969507
Target:  5'- cGAGCaGgc-CaUCAGCUCGCACaGCa -3'
miRNA:   3'- aCUCGaCauuGcAGUCGAGCGUG-CGc -5'
10898 5' -54 NC_002794.1 + 121040 0.66 0.969507
Target:  5'- aGAGC-GgcGCGUCGGg-CGC-CGCGa -3'
miRNA:   3'- aCUCGaCauUGCAGUCgaGCGuGCGC- -5'
10898 5' -54 NC_002794.1 + 62623 0.66 0.966442
Target:  5'- aGAGCUGcucugGGCGUCGGaccccgUCGCcCGCc -3'
miRNA:   3'- aCUCGACa----UUGCAGUCg-----AGCGuGCGc -5'
10898 5' -54 NC_002794.1 + 37891 0.66 0.966442
Target:  5'- gGGGCgGUGGCGgcggcagCGGCUCGC-CGg- -3'
miRNA:   3'- aCUCGaCAUUGCa------GUCGAGCGuGCgc -5'
10898 5' -54 NC_002794.1 + 150225 0.66 0.966442
Target:  5'- cGAGCUGcgugcGACGgCAGCUggaaGCGCuGCGg -3'
miRNA:   3'- aCUCGACa----UUGCaGUCGAg---CGUG-CGC- -5'
10898 5' -54 NC_002794.1 + 117852 0.66 0.966442
Target:  5'- gGAGCgc-GACGggGGCUgGCGCGCc -3'
miRNA:   3'- aCUCGacaUUGCagUCGAgCGUGCGc -5'
10898 5' -54 NC_002794.1 + 101734 0.66 0.966124
Target:  5'- gUGGGCcagGGCGUgagcuacCGGUUCGUGCGCGa -3'
miRNA:   3'- -ACUCGacaUUGCA-------GUCGAGCGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.