miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 192255 0.66 0.623272
Target:  5'- aCGGCG-CGguuCGCUCGUcuCUCGCGACGa -3'
miRNA:   3'- -GCCGCuGCug-GCGGGCG--GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 4505 0.66 0.623272
Target:  5'- -uGCaGACauCCGUCCGCCCCuaGACGu -3'
miRNA:   3'- gcCG-CUGcuGGCGGGCGGGGcgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 83877 0.66 0.623272
Target:  5'- uCGGCG-CGACgGCCCcgggcucgGCgCC-CGACGa -3'
miRNA:   3'- -GCCGCuGCUGgCGGG--------CGgGGcGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 57621 0.66 0.623272
Target:  5'- gCGGcCGACGACCuGgCCGaCCCGCa--- -3'
miRNA:   3'- -GCC-GCUGCUGG-CgGGCgGGGCGcugc -5'
10899 3' -65.5 NC_002794.1 + 121777 0.66 0.623272
Target:  5'- aGGCGcCG-CCGaucccCCCgGCCaCCGCGACc -3'
miRNA:   3'- gCCGCuGCuGGC-----GGG-CGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 138293 0.66 0.623272
Target:  5'- gGGUGGCGGCCuugGCCCGCaCgCUGuCGGgGa -3'
miRNA:   3'- gCCGCUGCUGG---CGGGCG-G-GGC-GCUgC- -5'
10899 3' -65.5 NC_002794.1 + 14203 0.66 0.623272
Target:  5'- cCGGCccgcUGGCCGCCCcaacGCcaCCCGcCGACGa -3'
miRNA:   3'- -GCCGcu--GCUGGCGGG----CG--GGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 49837 0.66 0.623272
Target:  5'- aGGCGAgGcGCCGCcauuCCGCgUCgGCGGCGc -3'
miRNA:   3'- gCCGCUgC-UGGCG----GGCG-GGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 194515 0.66 0.623272
Target:  5'- gCGGCccGCGuGCCGCCgGCCCagcaGCGcCGc -3'
miRNA:   3'- -GCCGc-UGC-UGGCGGgCGGGg---CGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 62819 0.66 0.623272
Target:  5'- cCGGCGcCGuacuuUCGCCCgGUCCC-CGACa -3'
miRNA:   3'- -GCCGCuGCu----GGCGGG-CGGGGcGCUGc -5'
10899 3' -65.5 NC_002794.1 + 90201 0.66 0.623272
Target:  5'- aCGGUGcccGCGccuCCGCCCGCCgCGcCGGa- -3'
miRNA:   3'- -GCCGC---UGCu--GGCGGGCGGgGC-GCUgc -5'
10899 3' -65.5 NC_002794.1 + 133925 0.66 0.623272
Target:  5'- aCGGCGGCcg-CGCCCGUCCaguuGCGGgGu -3'
miRNA:   3'- -GCCGCUGcugGCGGGCGGGg---CGCUgC- -5'
10899 3' -65.5 NC_002794.1 + 82774 0.66 0.623272
Target:  5'- -cGCGAacccucgcaacCGACCGCCgcguccacgCGCgCCGCGACc -3'
miRNA:   3'- gcCGCU-----------GCUGGCGG---------GCGgGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 6914 0.66 0.622344
Target:  5'- uCGGaUGAUGaccagaaGCCGCagCCGCCgCGCGGCa -3'
miRNA:   3'- -GCC-GCUGC-------UGGCG--GGCGGgGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 80899 0.66 0.620488
Target:  5'- cCGGCGgcccucgacgacccGCGcCCGCUCGaCCCCGaaacCGACu -3'
miRNA:   3'- -GCCGC--------------UGCuGGCGGGC-GGGGC----GCUGc -5'
10899 3' -65.5 NC_002794.1 + 150851 0.66 0.613993
Target:  5'- -aGCGGCGGCCGCgucuaCGCCUauaGcCGGCGc -3'
miRNA:   3'- gcCGCUGCUGGCGg----GCGGGg--C-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 44555 0.66 0.613993
Target:  5'- cCGGCGGCGG-CGCCCGUugacgUCaCGCGGg- -3'
miRNA:   3'- -GCCGCUGCUgGCGGGCG-----GG-GCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 185552 0.66 0.613993
Target:  5'- cCGGCcGCG--CGcCCCGCCCUGCcGCGg -3'
miRNA:   3'- -GCCGcUGCugGC-GGGCGGGGCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 118271 0.66 0.613993
Target:  5'- gGGCGGCGG-CGCCgGCgucggggaCCGCGcCGg -3'
miRNA:   3'- gCCGCUGCUgGCGGgCGg-------GGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 90677 0.66 0.613993
Target:  5'- cCGGCcGCGugGCUGUUCGUgugCCCGCGGCa -3'
miRNA:   3'- -GCCGcUGC--UGGCGGGCG---GGGCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.