Results 1 - 20 of 431 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10899 | 3' | -65.5 | NC_002794.1 | + | 90677 | 0.66 | 0.613993 |
Target: 5'- cCGGCcGCGugGCUGUUCGUgugCCCGCGGCa -3' miRNA: 3'- -GCCGcUGC--UGGCGGGCG---GGGCGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 4505 | 0.66 | 0.623272 |
Target: 5'- -uGCaGACauCCGUCCGCCCCuaGACGu -3' miRNA: 3'- gcCG-CUGcuGGCGGGCGGGGcgCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 6914 | 0.66 | 0.622344 |
Target: 5'- uCGGaUGAUGaccagaaGCCGCagCCGCCgCGCGGCa -3' miRNA: 3'- -GCC-GCUGC-------UGGCG--GGCGGgGCGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 80899 | 0.66 | 0.620488 |
Target: 5'- cCGGCGgcccucgacgacccGCGcCCGCUCGaCCCCGaaacCGACu -3' miRNA: 3'- -GCCGC--------------UGCuGGCGGGC-GGGGC----GCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 63803 | 0.66 | 0.613993 |
Target: 5'- -cGCGACGAcgucCCGCaCCGaCUUCGCGAuCGg -3' miRNA: 3'- gcCGCUGCU----GGCG-GGC-GGGGCGCU-GC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 150851 | 0.66 | 0.613993 |
Target: 5'- -aGCGGCGGCCGCgucuaCGCCUauaGcCGGCGc -3' miRNA: 3'- gcCGCUGCUGGCGg----GCGGGg--C-GCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 44555 | 0.66 | 0.613993 |
Target: 5'- cCGGCGGCGG-CGCCCGUugacgUCaCGCGGg- -3' miRNA: 3'- -GCCGCUGCUgGCGGGCG-----GG-GCGCUgc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 185552 | 0.66 | 0.613993 |
Target: 5'- cCGGCcGCG--CGcCCCGCCCUGCcGCGg -3' miRNA: 3'- -GCCGcUGCugGC-GGGCGGGGCGcUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 118271 | 0.66 | 0.613993 |
Target: 5'- gGGCGGCGG-CGCCgGCgucggggaCCGCGcCGg -3' miRNA: 3'- gCCGCUGCUgGCGGgCGg-------GGCGCuGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 83877 | 0.66 | 0.623272 |
Target: 5'- uCGGCG-CGACgGCCCcgggcucgGCgCC-CGACGa -3' miRNA: 3'- -GCCGCuGCUGgCGGG--------CGgGGcGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 57621 | 0.66 | 0.623272 |
Target: 5'- gCGGcCGACGACCuGgCCGaCCCGCa--- -3' miRNA: 3'- -GCC-GCUGCUGG-CgGGCgGGGCGcugc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 121777 | 0.66 | 0.623272 |
Target: 5'- aGGCGcCG-CCGaucccCCCgGCCaCCGCGACc -3' miRNA: 3'- gCCGCuGCuGGC-----GGG-CGG-GGCGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 82774 | 0.66 | 0.623272 |
Target: 5'- -cGCGAacccucgcaacCGACCGCCgcguccacgCGCgCCGCGACc -3' miRNA: 3'- gcCGCU-----------GCUGGCGG---------GCGgGGCGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 133925 | 0.66 | 0.623272 |
Target: 5'- aCGGCGGCcg-CGCCCGUCCaguuGCGGgGu -3' miRNA: 3'- -GCCGCUGcugGCGGGCGGGg---CGCUgC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 90201 | 0.66 | 0.623272 |
Target: 5'- aCGGUGcccGCGccuCCGCCCGCCgCGcCGGa- -3' miRNA: 3'- -GCCGC---UGCu--GGCGGGCGGgGC-GCUgc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 62819 | 0.66 | 0.623272 |
Target: 5'- cCGGCGcCGuacuuUCGCCCgGUCCC-CGACa -3' miRNA: 3'- -GCCGCuGCu----GGCGGG-CGGGGcGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 194515 | 0.66 | 0.623272 |
Target: 5'- gCGGCccGCGuGCCGCCgGCCCagcaGCGcCGc -3' miRNA: 3'- -GCCGc-UGC-UGGCGGgCGGGg---CGCuGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 49837 | 0.66 | 0.623272 |
Target: 5'- aGGCGAgGcGCCGCcauuCCGCgUCgGCGGCGc -3' miRNA: 3'- gCCGCUgC-UGGCG----GGCG-GGgCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 14203 | 0.66 | 0.623272 |
Target: 5'- cCGGCccgcUGGCCGCCCcaacGCcaCCCGcCGACGa -3' miRNA: 3'- -GCCGcu--GCUGGCGGG----CG--GGGC-GCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 138293 | 0.66 | 0.623272 |
Target: 5'- gGGUGGCGGCCuugGCCCGCaCgCUGuCGGgGa -3' miRNA: 3'- gCCGCUGCUGG---CGGGCG-G-GGC-GCUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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