Results 21 - 40 of 431 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10899 | 3' | -65.5 | NC_002794.1 | + | 149711 | 0.78 | 0.121548 |
Target: 5'- uGGCggGugGGCCGCCUGCCUCGCuACGg -3' miRNA: 3'- gCCG--CugCUGGCGGGCGGGGCGcUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 115081 | 0.78 | 0.113207 |
Target: 5'- aCGGCcucGGCGGCCGCCCGCagCCGCG-CGu -3' miRNA: 3'- -GCCG---CUGCUGGCGGGCGg-GGCGCuGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 110307 | 0.78 | 0.118706 |
Target: 5'- gCGGgGACucuCCGCUCGCCgCCGCGACGc -3' miRNA: 3'- -GCCgCUGcu-GGCGGGCGG-GGCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 117633 | 0.78 | 0.118706 |
Target: 5'- gGGCGcCGACCGCgCgGCCCCG-GACGa -3' miRNA: 3'- gCCGCuGCUGGCG-GgCGGGGCgCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 177836 | 0.78 | 0.124454 |
Target: 5'- gGGCGAUGAUCGCCUGCCaugCGCGAgCGc -3' miRNA: 3'- gCCGCUGCUGGCGGGCGGg--GCGCU-GC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 128000 | 0.78 | 0.121548 |
Target: 5'- gGGCgGACGACCGUcgucggCCGCCCCGuCGGCu -3' miRNA: 3'- gCCG-CUGCUGGCG------GGCGGGGC-GCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 107160 | 0.77 | 0.146656 |
Target: 5'- cCGGCGAgGGCCG-CCGCUaCGCGGCGg -3' miRNA: 3'- -GCCGCUgCUGGCgGGCGGgGCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 19466 | 0.77 | 0.139641 |
Target: 5'- gCGGCGGCGGCgggacccgccgguCGCCCGCaCCGaCGACGg -3' miRNA: 3'- -GCCGCUGCUG-------------GCGGGCGgGGC-GCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 12707 | 0.77 | 0.13356 |
Target: 5'- uCGGcCGugGGCUGCgCGUUCCGCGGCGa -3' miRNA: 3'- -GCC-GCugCUGGCGgGCGGGGCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 21933 | 0.77 | 0.148028 |
Target: 5'- gCGGCGGCGcggcgcucgucgaagGCCGUcggCCGCuCCCGCGGCGc -3' miRNA: 3'- -GCCGCUGC---------------UGGCG---GGCG-GGGCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 54997 | 0.77 | 0.131691 |
Target: 5'- aCGGCGGCGacucgccgggcguccGCCGCCgCGCCgCCGCGAg- -3' miRNA: 3'- -GCCGCUGC---------------UGGCGG-GCGG-GGCGCUgc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 65248 | 0.77 | 0.146656 |
Target: 5'- gCGGCGGCGAuCCgGCCuCGCCgaGCGGCGg -3' miRNA: 3'- -GCCGCUGCU-GG-CGG-GCGGggCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 49621 | 0.77 | 0.136729 |
Target: 5'- cCGGCGGCGcCuCGCCCGCCCCucuaaccguCGGCGa -3' miRNA: 3'- -GCCGCUGCuG-GCGGGCGGGGc--------GCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 71334 | 0.77 | 0.146656 |
Target: 5'- uCGGCGGCGAugUCGUCCGCCagGCGGCGc -3' miRNA: 3'- -GCCGCUGCU--GGCGGGCGGggCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 32282 | 0.77 | 0.13356 |
Target: 5'- uCGGCGAgCGacGCCG-CCGCCgCCGCGGCGg -3' miRNA: 3'- -GCCGCU-GC--UGGCgGGCGG-GGCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 15195 | 0.76 | 0.150109 |
Target: 5'- gGGUGaACGACCGCCCGCgaUgGCGGCGu -3' miRNA: 3'- gCCGC-UGCUGGCGGGCGg-GgCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 42245 | 0.76 | 0.152569 |
Target: 5'- gCGGCGACGAacuccgagcccgcuCCGCCCucGCCCCGCcGCc -3' miRNA: 3'- -GCCGCUGCU--------------GGCGGG--CGGGGCGcUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 21671 | 0.76 | 0.172414 |
Target: 5'- gCGGCGGCGGuauUCGCCCGCUCCGgcuccccgccuCGGCGu -3' miRNA: 3'- -GCCGCUGCU---GGCGGGCGGGGC-----------GCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 128156 | 0.76 | 0.172414 |
Target: 5'- -cGCGACGGCgGCUCGCgCCGCgGACGg -3' miRNA: 3'- gcCGCUGCUGgCGGGCGgGGCG-CUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 115931 | 0.76 | 0.160913 |
Target: 5'- gCGGCGGCgGGCCgGCCCGCCgCGUGuCGc -3' miRNA: 3'- -GCCGCUG-CUGG-CGGGCGGgGCGCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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