miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 11861 1.08 0.000832
Target:  5'- cCGGCGACGACCGCCCGCCCCGCGACGg -3'
miRNA:   3'- -GCCGCUGCUGGCGGGCGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 72450 0.85 0.037849
Target:  5'- cCGGCGGCGcCCcgcGCCCgGCCCCGCGGCGg -3'
miRNA:   3'- -GCCGCUGCuGG---CGGG-CGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 18553 0.85 0.041785
Target:  5'- aCGGCGGCGACCGCgaCCGUgCCCGCGACc -3'
miRNA:   3'- -GCCGCUGCUGGCG--GGCG-GGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 61561 0.84 0.04612
Target:  5'- gCGGCGGCGGCCGCCguCGaacaccuagacCCCCGCGACGa -3'
miRNA:   3'- -GCCGCUGCUGGCGG--GC-----------GGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 193752 0.82 0.061921
Target:  5'- uCGGCGAgCGACCGCCgGCCCCGCu--- -3'
miRNA:   3'- -GCCGCU-GCUGGCGGgCGGGGCGcugc -5'
10899 3' -65.5 NC_002794.1 + 152583 0.82 0.065021
Target:  5'- -cGCGGCGGCCGCCaCGuCCCUGCGGCGc -3'
miRNA:   3'- gcCGCUGCUGGCGG-GC-GGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 24032 0.82 0.066141
Target:  5'- uCGGCGACGGcggucccuccccguCCGCCCGCCCCG-GACc -3'
miRNA:   3'- -GCCGCUGCU--------------GGCGGGCGGGGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 70231 0.81 0.073439
Target:  5'- gGGCgGGCGGCCGgCCGCCCCGCagcaGACGc -3'
miRNA:   3'- gCCG-CUGCUGGCgGGCGGGGCG----CUGC- -5'
10899 3' -65.5 NC_002794.1 + 8315 0.81 0.075243
Target:  5'- aGGCGGC-ACCGCCgCGCCCCGCGcCa -3'
miRNA:   3'- gCCGCUGcUGGCGG-GCGGGGCGCuGc -5'
10899 3' -65.5 NC_002794.1 + 61725 0.8 0.080917
Target:  5'- aGGU--UGACCGCCCGCCCCGCGGa- -3'
miRNA:   3'- gCCGcuGCUGGCGGGCGGGGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 108405 0.8 0.080917
Target:  5'- cCGGCGGCGGCgcccaccacggCGCCCaCCCCGCGACc -3'
miRNA:   3'- -GCCGCUGCUG-----------GCGGGcGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 14495 0.8 0.082897
Target:  5'- -cGCGGCGGCgGCCCGCgCUCGCGGCGc -3'
miRNA:   3'- gcCGCUGCUGgCGGGCG-GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 34339 0.8 0.082897
Target:  5'- aGGCGACGGCCGCgCCGUUCCGCccgcucuaccugGACGa -3'
miRNA:   3'- gCCGCUGCUGGCG-GGCGGGGCG------------CUGC- -5'
10899 3' -65.5 NC_002794.1 + 56569 0.8 0.084923
Target:  5'- cCGcCGcCGACCGCCCGCgCCGCGGCGc -3'
miRNA:   3'- -GCcGCuGCUGGCGGGCGgGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 46317 0.8 0.091289
Target:  5'- gCGGCGGCGACgGCgCCGUCgCCGCgGACGg -3'
miRNA:   3'- -GCCGCUGCUGgCG-GGCGG-GGCG-CUGC- -5'
10899 3' -65.5 NC_002794.1 + 190761 0.79 0.098106
Target:  5'- gGGCGGCGGCCGCgCGUCCCGguaGAUGa -3'
miRNA:   3'- gCCGCUGCUGGCGgGCGGGGCg--CUGC- -5'
10899 3' -65.5 NC_002794.1 + 58029 0.79 0.100484
Target:  5'- cCGGCGAacccgcCGcGCCGCCCGuCCCCGuCGGCGg -3'
miRNA:   3'- -GCCGCU------GC-UGGCGGGC-GGGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 67018 0.79 0.102916
Target:  5'- cCGGCGGCGGCgGCCgGCuCCCGCcGCGu -3'
miRNA:   3'- -GCCGCUGCUGgCGGgCG-GGGCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 63477 0.79 0.105152
Target:  5'- aGGCGGCGGCCGCCgucgacgaCGCCgcggcgucgucguCCGCGACGc -3'
miRNA:   3'- gCCGCUGCUGGCGG--------GCGG-------------GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 115081 0.78 0.113207
Target:  5'- aCGGCcucGGCGGCCGCCCGCagCCGCG-CGu -3'
miRNA:   3'- -GCCG---CUGCUGGCGGGCGg-GGCGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.