miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 110307 0.78 0.118706
Target:  5'- gCGGgGACucuCCGCUCGCCgCCGCGACGc -3'
miRNA:   3'- -GCCgCUGcu-GGCGGGCGG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 117633 0.78 0.118706
Target:  5'- gGGCGcCGACCGCgCgGCCCCG-GACGa -3'
miRNA:   3'- gCCGCuGCUGGCG-GgCGGGGCgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 128000 0.78 0.121548
Target:  5'- gGGCgGACGACCGUcgucggCCGCCCCGuCGGCu -3'
miRNA:   3'- gCCG-CUGCUGGCG------GGCGGGGC-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 149711 0.78 0.121548
Target:  5'- uGGCggGugGGCCGCCUGCCUCGCuACGg -3'
miRNA:   3'- gCCG--CugCUGGCGGGCGGGGCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 177836 0.78 0.124454
Target:  5'- gGGCGAUGAUCGCCUGCCaugCGCGAgCGc -3'
miRNA:   3'- gCCGCUGCUGGCGGGCGGg--GCGCU-GC- -5'
10899 3' -65.5 NC_002794.1 + 96732 0.78 0.127423
Target:  5'- cCGGCGACGACCGCCggcgCGUCUCGCaaGCGg -3'
miRNA:   3'- -GCCGCUGCUGGCGG----GCGGGGCGc-UGC- -5'
10899 3' -65.5 NC_002794.1 + 54997 0.77 0.131691
Target:  5'- aCGGCGGCGacucgccgggcguccGCCGCCgCGCCgCCGCGAg- -3'
miRNA:   3'- -GCCGCUGC---------------UGGCGG-GCGG-GGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 32282 0.77 0.13356
Target:  5'- uCGGCGAgCGacGCCG-CCGCCgCCGCGGCGg -3'
miRNA:   3'- -GCCGCU-GC--UGGCgGGCGG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 12707 0.77 0.13356
Target:  5'- uCGGcCGugGGCUGCgCGUUCCGCGGCGa -3'
miRNA:   3'- -GCC-GCugCUGGCGgGCGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 49621 0.77 0.136729
Target:  5'- cCGGCGGCGcCuCGCCCGCCCCucuaaccguCGGCGa -3'
miRNA:   3'- -GCCGCUGCuG-GCGGGCGGGGc--------GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 19466 0.77 0.139641
Target:  5'- gCGGCGGCGGCgggacccgccgguCGCCCGCaCCGaCGACGg -3'
miRNA:   3'- -GCCGCUGCUG-------------GCGGGCGgGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 107160 0.77 0.146656
Target:  5'- cCGGCGAgGGCCG-CCGCUaCGCGGCGg -3'
miRNA:   3'- -GCCGCUgCUGGCgGGCGGgGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 65248 0.77 0.146656
Target:  5'- gCGGCGGCGAuCCgGCCuCGCCgaGCGGCGg -3'
miRNA:   3'- -GCCGCUGCU-GG-CGG-GCGGggCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 71334 0.77 0.146656
Target:  5'- uCGGCGGCGAugUCGUCCGCCagGCGGCGc -3'
miRNA:   3'- -GCCGCUGCU--GGCGGGCGGggCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 21933 0.77 0.148028
Target:  5'- gCGGCGGCGcggcgcucgucgaagGCCGUcggCCGCuCCCGCGGCGc -3'
miRNA:   3'- -GCCGCUGC---------------UGGCG---GGCG-GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 15195 0.76 0.150109
Target:  5'- gGGUGaACGACCGCCCGCgaUgGCGGCGu -3'
miRNA:   3'- gCCGC-UGCUGGCGGGCGg-GgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 42245 0.76 0.152569
Target:  5'- gCGGCGACGAacuccgagcccgcuCCGCCCucGCCCCGCcGCc -3'
miRNA:   3'- -GCCGCUGCU--------------GGCGGG--CGGGGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 138440 0.76 0.153635
Target:  5'- gCGGUGGCGGCggCGCCuCGgCCUGCGACGu -3'
miRNA:   3'- -GCCGCUGCUG--GCGG-GCgGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 115931 0.76 0.160913
Target:  5'- gCGGCGGCgGGCCgGCCCGCCgCGUGuCGc -3'
miRNA:   3'- -GCCGCUG-CUGG-CGGGCGGgGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 128156 0.76 0.172414
Target:  5'- -cGCGACGGCgGCUCGCgCCGCgGACGg -3'
miRNA:   3'- gcCGCUGCUGgCGGGCGgGGCG-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.