miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 128156 0.76 0.172414
Target:  5'- -cGCGACGGCgGCUCGCgCCGCgGACGg -3'
miRNA:   3'- gcCGCUGCUGgCGGGCGgGGCG-CUGC- -5'
10899 3' -65.5 NC_002794.1 + 75351 0.75 0.176408
Target:  5'- cCGGCGACGGuucgccaccgacCCGCCgCGgCCgGCGGCGg -3'
miRNA:   3'- -GCCGCUGCU------------GGCGG-GCgGGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 68827 0.75 0.176408
Target:  5'- aCGGCGACG-CCGCCgGCgCUCGCGGu- -3'
miRNA:   3'- -GCCGCUGCuGGCGGgCG-GGGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 118180 0.75 0.178028
Target:  5'- gCGGCGACGcgccgaccuuccgucGCCGCCgccguCGCCUCGCgGACGg -3'
miRNA:   3'- -GCCGCUGC---------------UGGCGG-----GCGGGGCG-CUGC- -5'
10899 3' -65.5 NC_002794.1 + 105909 0.75 0.180483
Target:  5'- gCGGCGGCGGCgCuaCCGCCgCCGCcgGACGg -3'
miRNA:   3'- -GCCGCUGCUG-GcgGGCGG-GGCG--CUGC- -5'
10899 3' -65.5 NC_002794.1 + 14794 0.75 0.184643
Target:  5'- cCGGCG-UGACCGCgaccacgucaCGCCCCGCGAUc -3'
miRNA:   3'- -GCCGCuGCUGGCGg---------GCGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 22910 0.75 0.184643
Target:  5'- aCGGCGGCGACCGCggCCGCCaaaC-CGGCa -3'
miRNA:   3'- -GCCGCUGCUGGCG--GGCGGg--GcGCUGc -5'
10899 3' -65.5 NC_002794.1 + 50734 0.75 0.187604
Target:  5'- cCGG-GGCGGCCGCcucgacucgcucguCCGCCCCggGCGGCGg -3'
miRNA:   3'- -GCCgCUGCUGGCG--------------GGCGGGG--CGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 147010 0.75 0.188886
Target:  5'- gCGGCGGCGGCCGCCggCGCUCgGUcuaagGACGa -3'
miRNA:   3'- -GCCGCUGCUGGCGG--GCGGGgCG-----CUGC- -5'
10899 3' -65.5 NC_002794.1 + 66252 0.75 0.193215
Target:  5'- -uGCGGCGAcCCGUCCgGCCCCGUaGACGa -3'
miRNA:   3'- gcCGCUGCU-GGCGGG-CGGGGCG-CUGC- -5'
10899 3' -65.5 NC_002794.1 + 185765 0.75 0.193215
Target:  5'- cCGGCG-CGGCCGCCCGUCacaCGuCGGCc -3'
miRNA:   3'- -GCCGCuGCUGGCGGGCGGg--GC-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 181236 0.75 0.193215
Target:  5'- cCGGCGACGGCgCGCCUuCCaCCGCG-CGu -3'
miRNA:   3'- -GCCGCUGCUG-GCGGGcGG-GGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 78111 0.75 0.197631
Target:  5'- gCGGCGGCGccuccagacGCCGCCCGagCCGCGAgCGc -3'
miRNA:   3'- -GCCGCUGC---------UGGCGGGCggGGCGCU-GC- -5'
10899 3' -65.5 NC_002794.1 + 188342 0.75 0.197631
Target:  5'- cCGGCGGCGccguCgCGCCCGUCCgGcCGGCGg -3'
miRNA:   3'- -GCCGCUGCu---G-GCGGGCGGGgC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 61518 0.75 0.197631
Target:  5'- cCGGaCGGCGGCCGCCggcgGCCgCCGCGAa- -3'
miRNA:   3'- -GCC-GCUGCUGGCGGg---CGG-GGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 79965 0.75 0.197631
Target:  5'- uGGCGuACGACC-CCCgGCUCgGCGACGa -3'
miRNA:   3'- gCCGC-UGCUGGcGGG-CGGGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 13321 0.75 0.197631
Target:  5'- gCGaGCGACGACCGCUC-CCCCggucgggggugGCGGCGc -3'
miRNA:   3'- -GC-CGCUGCUGGCGGGcGGGG-----------CGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 38499 0.74 0.202134
Target:  5'- gCGGCGGCGccggucGCCG-CCGCCuCCGCGAUc -3'
miRNA:   3'- -GCCGCUGC------UGGCgGGCGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 36910 0.74 0.202134
Target:  5'- aGGUcGCGG-CGCCgGCCCCGCGACc -3'
miRNA:   3'- gCCGcUGCUgGCGGgCGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 102187 0.74 0.202134
Target:  5'- gCGGCGAgGACCuGgCgGCCgCCGUGACGg -3'
miRNA:   3'- -GCCGCUgCUGG-CgGgCGG-GGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.