miRNA display CGI


Results 61 - 80 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 66717 0.74 0.211409
Target:  5'- cCGGC-ACGGCCG-CCGCCaCCGcCGGCGg -3'
miRNA:   3'- -GCCGcUGCUGGCgGGCGG-GGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 120089 0.74 0.211409
Target:  5'- gCGGCGACGACCGUgccgagcgcgCCGCgCgugacgcgCGCGACGg -3'
miRNA:   3'- -GCCGCUGCUGGCG----------GGCGgG--------GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 19331 0.74 0.219578
Target:  5'- uGGCGacccgcGCGccggucacccccucGCCGCCCGCCCCGCccggaucgGGCGg -3'
miRNA:   3'- gCCGC------UGC--------------UGGCGGGCGGGGCG--------CUGC- -5'
10899 3' -65.5 NC_002794.1 + 193282 0.74 0.221047
Target:  5'- gCGGCGuGCGccgguagucGCCGUCCGCUCCGCGcCGc -3'
miRNA:   3'- -GCCGC-UGC---------UGGCGGGCGGGGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 179614 0.74 0.221047
Target:  5'- gCGGCGcgaGCGACUGCCgGgCgCUGCGACGg -3'
miRNA:   3'- -GCCGC---UGCUGGCGGgCgG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 49422 0.74 0.221047
Target:  5'- gCGGCGGCGGCCGUCacggCGUCCgGCG-CGg -3'
miRNA:   3'- -GCCGCUGCUGGCGG----GCGGGgCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 84071 0.74 0.226005
Target:  5'- cCGGagaCGACGACCGCCgCGCCgCCGCcACc -3'
miRNA:   3'- -GCC---GCUGCUGGCGG-GCGG-GGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 17255 0.74 0.228015
Target:  5'- aCGGCGGCGACCcggcucgucacccggGCaCGCCgCCGcCGACGg -3'
miRNA:   3'- -GCCGCUGCUGG---------------CGgGCGG-GGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 183445 0.74 0.230548
Target:  5'- cCGGCGcccgccaccgccgGCGcCCGCCCGCCgcgaguCCGCGGCc -3'
miRNA:   3'- -GCCGC-------------UGCuGGCGGGCGG------GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 78009 0.74 0.230548
Target:  5'- cCGGCGGCGGCgccgucgggagaaCGCCCGCCgCCGCccuCGc -3'
miRNA:   3'- -GCCGCUGCUG-------------GCGGGCGG-GGCGcu-GC- -5'
10899 3' -65.5 NC_002794.1 + 131735 0.74 0.231057
Target:  5'- gGGCGA-GAUcgCGCUCGCCUCGCGACc -3'
miRNA:   3'- gCCGCUgCUG--GCGGGCGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 64775 0.74 0.231057
Target:  5'- gGGaCGACGAagacgaCGCCgGUUCCGCGGCGa -3'
miRNA:   3'- gCC-GCUGCUg-----GCGGgCGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 105445 0.74 0.231057
Target:  5'- cCGGCGGCGccgucguuCUGCCCGUUCUGgGACGa -3'
miRNA:   3'- -GCCGCUGCu-------GGCGGGCGGGGCgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 62506 0.74 0.231057
Target:  5'- gGGCGGCG-CCGCcggcgccuCCGCCCacCGUGACGa -3'
miRNA:   3'- gCCGCUGCuGGCG--------GGCGGG--GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 120056 0.74 0.231057
Target:  5'- gCGGUGGCGGCCGCggagGCCgaCGCGGCGg -3'
miRNA:   3'- -GCCGCUGCUGGCGgg--CGGg-GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 107784 0.74 0.233105
Target:  5'- cCGGCGACGACCGCguCCgcgcgcauugcgaacGCCUCGCGGu- -3'
miRNA:   3'- -GCCGCUGCUGGCG--GG---------------CGGGGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 187585 0.73 0.235686
Target:  5'- uCGGCG-CGGCCGCCgucgcgaCGCCCgGCGuCGc -3'
miRNA:   3'- -GCCGCuGCUGGCGG-------GCGGGgCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 77022 0.73 0.236205
Target:  5'- cCGGCGcaccuCGACCGCUCGuCCCCGCu-CGu -3'
miRNA:   3'- -GCCGCu----GCUGGCGGGC-GGGGCGcuGC- -5'
10899 3' -65.5 NC_002794.1 + 108200 0.73 0.236205
Target:  5'- gCGGCGcuGCG-CCGCCgcgccggccucgCGCCCUGCGGCa -3'
miRNA:   3'- -GCCGC--UGCuGGCGG------------GCGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 90478 0.73 0.236205
Target:  5'- gCGGCGG-GGCCG-CCGUCCCGCG-CGa -3'
miRNA:   3'- -GCCGCUgCUGGCgGGCGGGGCGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.