miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 107058 0.66 0.613993
Target:  5'- aGGCGGCGGgCGCggCGCCgCCGgcaugucggagcCGACGg -3'
miRNA:   3'- gCCGCUGCUgGCGg-GCGG-GGC------------GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 95838 0.66 0.613993
Target:  5'- gCGGCGGCGGCgGCCgGggagGCGGCGg -3'
miRNA:   3'- -GCCGCUGCUGgCGGgCggggCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 90677 0.66 0.613993
Target:  5'- cCGGCcGCGugGCUGUUCGUgugCCCGCGGCa -3'
miRNA:   3'- -GCCGcUGC--UGGCGGGCG---GGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 118271 0.66 0.613993
Target:  5'- gGGCGGCGG-CGCCgGCgucggggaCCGCGcCGg -3'
miRNA:   3'- gCCGCUGCUgGCGGgCGg-------GGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 185552 0.66 0.613993
Target:  5'- cCGGCcGCG--CGcCCCGCCCUGCcGCGg -3'
miRNA:   3'- -GCCGcUGCugGC-GGGCGGGGCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 44555 0.66 0.613993
Target:  5'- cCGGCGGCGG-CGCCCGUugacgUCaCGCGGg- -3'
miRNA:   3'- -GCCGCUGCUgGCGGGCG-----GG-GCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 150851 0.66 0.613993
Target:  5'- -aGCGGCGGCCGCgucuaCGCCUauaGcCGGCGc -3'
miRNA:   3'- gcCGCUGCUGGCGg----GCGGGg--C-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 63803 0.66 0.613993
Target:  5'- -cGCGACGAcgucCCGCaCCGaCUUCGCGAuCGg -3'
miRNA:   3'- gcCGCUGCU----GGCG-GGC-GGGGCGCU-GC- -5'
10899 3' -65.5 NC_002794.1 + 191798 0.66 0.611211
Target:  5'- -cGCu-CGACCGCCCGCUcggccgcucgaggaCCGCGAg- -3'
miRNA:   3'- gcCGcuGCUGGCGGGCGG--------------GGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 195536 0.66 0.611211
Target:  5'- aCGGCgGACG-CCGCacccacgcccugagCCGCCCCGagccgcccCGACc -3'
miRNA:   3'- -GCCG-CUGCuGGCG--------------GGCGGGGC--------GCUGc -5'
10899 3' -65.5 NC_002794.1 + 79007 0.66 0.605651
Target:  5'- gCGGCGAcuccaucccgcccuCGGCCGCcuucugccggcccggCCGCuCCCGCG-Cu -3'
miRNA:   3'- -GCCGCU--------------GCUGGCG---------------GGCG-GGGCGCuGc -5'
10899 3' -65.5 NC_002794.1 + 56918 0.66 0.604725
Target:  5'- gGGCGcCgGGCUGCCgGCCUCGCaccaGACc -3'
miRNA:   3'- gCCGCuG-CUGGCGGgCGGGGCG----CUGc -5'
10899 3' -65.5 NC_002794.1 + 20553 0.66 0.604725
Target:  5'- gGGCGAcCGGaucCCGCCguCGCUCCGCaACa -3'
miRNA:   3'- gCCGCU-GCU---GGCGG--GCGGGGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 98079 0.66 0.604725
Target:  5'- uGGCGGCG-CUGUCCGCUuuGgCGGg- -3'
miRNA:   3'- gCCGCUGCuGGCGGGCGGggC-GCUgc -5'
10899 3' -65.5 NC_002794.1 + 106391 0.66 0.604725
Target:  5'- aCGGCgGGCGaACgGUCgGaCCCCGgCGGCGc -3'
miRNA:   3'- -GCCG-CUGC-UGgCGGgC-GGGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 107524 0.66 0.604725
Target:  5'- aCGcCGACGGCCgGCgCgGCgCCgGCGGCGa -3'
miRNA:   3'- -GCcGCUGCUGG-CG-GgCG-GGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 180672 0.66 0.604725
Target:  5'- cCGGgGAacucgcCGGCCGCUcccggCGCCCgGCGgGCGg -3'
miRNA:   3'- -GCCgCU------GCUGGCGG-----GCGGGgCGC-UGC- -5'
10899 3' -65.5 NC_002794.1 + 51062 0.66 0.604725
Target:  5'- aCGGCGGCGACgGCgaCCuCCgaGCGugGc -3'
miRNA:   3'- -GCCGCUGCUGgCG--GGcGGggCGCugC- -5'
10899 3' -65.5 NC_002794.1 + 60007 0.66 0.604725
Target:  5'- cCGGCGcCGAgCGCaCCGaCCUGCucGACGc -3'
miRNA:   3'- -GCCGCuGCUgGCG-GGCgGGGCG--CUGC- -5'
10899 3' -65.5 NC_002794.1 + 16882 0.66 0.604725
Target:  5'- gCGGCaGCaACCa-CCGCCgCCGCGACa -3'
miRNA:   3'- -GCCGcUGcUGGcgGGCGG-GGCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.