miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 51062 0.66 0.604725
Target:  5'- aCGGCGGCGACgGCgaCCuCCgaGCGugGc -3'
miRNA:   3'- -GCCGCUGCUGgCG--GGcGGggCGCugC- -5'
10899 3' -65.5 NC_002794.1 + 180672 0.66 0.604725
Target:  5'- cCGGgGAacucgcCGGCCGCUcccggCGCCCgGCGgGCGg -3'
miRNA:   3'- -GCCgCU------GCUGGCGG-----GCGGGgCGC-UGC- -5'
10899 3' -65.5 NC_002794.1 + 107524 0.66 0.604725
Target:  5'- aCGcCGACGGCCgGCgCgGCgCCgGCGGCGa -3'
miRNA:   3'- -GCcGCUGCUGG-CG-GgCG-GGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 106391 0.66 0.604725
Target:  5'- aCGGCgGGCGaACgGUCgGaCCCCGgCGGCGc -3'
miRNA:   3'- -GCCG-CUGC-UGgCGGgC-GGGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 105622 0.66 0.599172
Target:  5'- aGGCucGGCGACCaGCCCGaguaCgcguucuccgucucgCCGCGGCGc -3'
miRNA:   3'- gCCG--CUGCUGG-CGGGCg---G---------------GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 34729 0.66 0.595474
Target:  5'- aGGCGcggGCGGCCGCagaGCg-CGCGACGg -3'
miRNA:   3'- gCCGC---UGCUGGCGgg-CGggGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 23637 0.66 0.595474
Target:  5'- gCGGCccuCGACCcccUCCGCCCCccgaGCGACc -3'
miRNA:   3'- -GCCGcu-GCUGGc--GGGCGGGG----CGCUGc -5'
10899 3' -65.5 NC_002794.1 + 183618 0.66 0.595474
Target:  5'- gCGGcCGGCGcCC-CCgCGCCCC-CGACu -3'
miRNA:   3'- -GCC-GCUGCuGGcGG-GCGGGGcGCUGc -5'
10899 3' -65.5 NC_002794.1 + 1493 0.66 0.595474
Target:  5'- aGGCGGCGACCgGCCUuauacgggGUCCgGaGGCGu -3'
miRNA:   3'- gCCGCUGCUGG-CGGG--------CGGGgCgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 150726 0.66 0.595474
Target:  5'- aCGuGCGGCGGCUGaCCGCguuCCCGUG-CGu -3'
miRNA:   3'- -GC-CGCUGCUGGCgGGCG---GGGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 138924 0.66 0.595474
Target:  5'- gCGGCGGauggucugccgGugCGCCC-CCaCCGUGGCGu -3'
miRNA:   3'- -GCCGCUg----------CugGCGGGcGG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 43711 0.66 0.595474
Target:  5'- uGGUGAUGACCGUCUcgGCCaCC-CGAuCGg -3'
miRNA:   3'- gCCGCUGCUGGCGGG--CGG-GGcGCU-GC- -5'
10899 3' -65.5 NC_002794.1 + 103908 0.66 0.595474
Target:  5'- gGGCGA-GAaCGCCgCGCaaCGCGGCGa -3'
miRNA:   3'- gCCGCUgCUgGCGG-GCGggGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 181745 0.66 0.595474
Target:  5'- gCGaGCGGcCGGCCaGCCCGCUgaCGcCGAUGg -3'
miRNA:   3'- -GC-CGCU-GCUGG-CGGGCGGg-GC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 107029 0.66 0.595474
Target:  5'- -cGCGGCG-CCGCUgGggacCCCCGCGuCGg -3'
miRNA:   3'- gcCGCUGCuGGCGGgC----GGGGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 843 0.66 0.595474
Target:  5'- cCGGCGcgugcguuCGGCCcaGCgCGCgCCCGCGAgGc -3'
miRNA:   3'- -GCCGCu-------GCUGG--CGgGCG-GGGCGCUgC- -5'
10899 3' -65.5 NC_002794.1 + 17314 0.66 0.595474
Target:  5'- aCGGUGACGACgGUCagGCCgC-CGGCGu -3'
miRNA:   3'- -GCCGCUGCUGgCGGg-CGGgGcGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 104776 0.66 0.595474
Target:  5'- cCGGCGcucCGACaCGCCgacaggcggugcUGCUUCGCGAUGg -3'
miRNA:   3'- -GCCGCu--GCUG-GCGG------------GCGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 91479 0.66 0.595474
Target:  5'- gGGCGagcGCGACCaGCUguUGCUgUGCGACGc -3'
miRNA:   3'- gCCGC---UGCUGG-CGG--GCGGgGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 126539 0.66 0.595474
Target:  5'- -cGCGACcuacuGACCGggaacaCCGUCgCCGCGGCGg -3'
miRNA:   3'- gcCGCUG-----CUGGCg-----GGCGG-GGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.