miRNA display CGI


Results 61 - 80 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 110211 0.66 0.59455
Target:  5'- gGGUcgcucagGACGuCCGUCCGgaucgagucCUCCGCGGCGg -3'
miRNA:   3'- gCCG-------CUGCuGGCGGGC---------GGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 16307 0.66 0.586245
Target:  5'- gCGGCcGCGGCCGgcuggaucccCCUGCCCCuggcCGGCa -3'
miRNA:   3'- -GCCGcUGCUGGC----------GGGCGGGGc---GCUGc -5'
10899 3' -65.5 NC_002794.1 + 79777 0.66 0.586245
Target:  5'- uGGCG-CGGuUCGCCCGCuacgCCCGCGAgCGc -3'
miRNA:   3'- gCCGCuGCU-GGCGGGCG----GGGCGCU-GC- -5'
10899 3' -65.5 NC_002794.1 + 77113 0.66 0.586245
Target:  5'- aGGC-ACGACCGCgCuCCCCG-GACc -3'
miRNA:   3'- gCCGcUGCUGGCGgGcGGGGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 20985 0.66 0.586245
Target:  5'- -aGCGGCGGCgGCa-GCgaCCGCGGCGg -3'
miRNA:   3'- gcCGCUGCUGgCGggCGg-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 51096 0.66 0.586245
Target:  5'- uCGGaaaaGACGACCGC--GCCUCGCGcuCGg -3'
miRNA:   3'- -GCCg---CUGCUGGCGggCGGGGCGCu-GC- -5'
10899 3' -65.5 NC_002794.1 + 181593 0.66 0.586245
Target:  5'- gGGCcGCGACCgGgUCGCCCCGUuGCc -3'
miRNA:   3'- gCCGcUGCUGG-CgGGCGGGGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 16550 0.66 0.586245
Target:  5'- cCGGCGuCGccACCGCcaCCGCCgCCGCcGCc -3'
miRNA:   3'- -GCCGCuGC--UGGCG--GGCGG-GGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 58804 0.66 0.586245
Target:  5'- cCGGCGccucuaccCGcccuuccucaACCGCCUGCCgCGCGAgGa -3'
miRNA:   3'- -GCCGCu-------GC----------UGGCGGGCGGgGCGCUgC- -5'
10899 3' -65.5 NC_002794.1 + 153363 0.66 0.586245
Target:  5'- gCGGCc-CGGCUGCgCGCCCuCGUGGuCGa -3'
miRNA:   3'- -GCCGcuGCUGGCGgGCGGG-GCGCU-GC- -5'
10899 3' -65.5 NC_002794.1 + 106049 0.66 0.583481
Target:  5'- gCGGCugaacuucgucaacGugGGCCGCCgGCa-CGCGGCu -3'
miRNA:   3'- -GCCG--------------CugCUGGCGGgCGggGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 67429 0.66 0.58072
Target:  5'- uCGGCGGCGugucGcgccgcuucgggcucCCGCCCGCaCUCGcCGACc -3'
miRNA:   3'- -GCCGCUGC----U---------------GGCGGGCG-GGGC-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 19601 0.66 0.577043
Target:  5'- cCGGCGAgCGGCCGa--GCCaCCGacuCGACGa -3'
miRNA:   3'- -GCCGCU-GCUGGCgggCGG-GGC---GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 143448 0.66 0.577043
Target:  5'- aCGGUcACGA--GCCCGCCgCgCGCGAUGa -3'
miRNA:   3'- -GCCGcUGCUggCGGGCGG-G-GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 35648 0.66 0.577043
Target:  5'- cCGG-GACGGgCGCCCGguCUCCGaCGugGu -3'
miRNA:   3'- -GCCgCUGCUgGCGGGC--GGGGC-GCugC- -5'
10899 3' -65.5 NC_002794.1 + 119686 0.66 0.577043
Target:  5'- cCGGCGucucCGGCUGCUgGgCCgGCGGCc -3'
miRNA:   3'- -GCCGCu---GCUGGCGGgCgGGgCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 193981 0.66 0.577043
Target:  5'- -cGCcGCGGCCGCuaccgCCGCCCC-CGGCu -3'
miRNA:   3'- gcCGcUGCUGGCG-----GGCGGGGcGCUGc -5'
10899 3' -65.5 NC_002794.1 + 57984 0.66 0.577043
Target:  5'- aCGGCGAgcCGACgCGCCaggccuucguCGCCgCCGgGGCc -3'
miRNA:   3'- -GCCGCU--GCUG-GCGG----------GCGG-GGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 195263 0.66 0.577043
Target:  5'- cCGGCGgggacugcaGCGACaCGCaCCGaCCCGCGcACc -3'
miRNA:   3'- -GCCGC---------UGCUG-GCG-GGCgGGGCGC-UGc -5'
10899 3' -65.5 NC_002794.1 + 81777 0.66 0.577043
Target:  5'- cCGGC-ACGGCCGUCCGCgagauuUCCGCuGCc -3'
miRNA:   3'- -GCCGcUGCUGGCGGGCG------GGGCGcUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.