miRNA display CGI


Results 81 - 100 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 57984 0.66 0.577043
Target:  5'- aCGGCGAgcCGACgCGCCaggccuucguCGCCgCCGgGGCc -3'
miRNA:   3'- -GCCGCU--GCUG-GCGG----------GCGG-GGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 195263 0.66 0.577043
Target:  5'- cCGGCGgggacugcaGCGACaCGCaCCGaCCCGCGcACc -3'
miRNA:   3'- -GCCGC---------UGCUG-GCG-GGCgGGGCGC-UGc -5'
10899 3' -65.5 NC_002794.1 + 66291 0.66 0.577043
Target:  5'- cCGaGCGccCGuCCGUCCGCCCucgcuuCGCGACu -3'
miRNA:   3'- -GC-CGCu-GCuGGCGGGCGGG------GCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 59 0.66 0.576124
Target:  5'- aCGGcCGACGcCCGCCaccgguaacgaaaCGCCCC-CGAgGc -3'
miRNA:   3'- -GCC-GCUGCuGGCGG-------------GCGGGGcGCUgC- -5'
10899 3' -65.5 NC_002794.1 + 49289 0.67 0.567873
Target:  5'- gGGCGcCG-CCGCcuccCCGUCCCGCaccccGGCGa -3'
miRNA:   3'- gCCGCuGCuGGCG----GGCGGGGCG-----CUGC- -5'
10899 3' -65.5 NC_002794.1 + 41287 0.67 0.567873
Target:  5'- aCGGCGGCGGCU-CCgaCGCgggCCGCGugGg -3'
miRNA:   3'- -GCCGCUGCUGGcGG--GCGg--GGCGCugC- -5'
10899 3' -65.5 NC_002794.1 + 70658 0.67 0.567873
Target:  5'- uGGCcuCGugCGCggCgGCCgCCGCGGCGg -3'
miRNA:   3'- gCCGcuGCugGCG--GgCGG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 65742 0.67 0.567873
Target:  5'- cCGGCcuccGACGGCCccGCgCCGCCgCCGCccGugGu -3'
miRNA:   3'- -GCCG----CUGCUGG--CG-GGCGG-GGCG--CugC- -5'
10899 3' -65.5 NC_002794.1 + 178855 0.67 0.567873
Target:  5'- cCGGac-CGAgCCGCCCGCCCUucCGACu -3'
miRNA:   3'- -GCCgcuGCU-GGCGGGCGGGGc-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 188787 0.67 0.567873
Target:  5'- gCGGUaGCGGCCGgcCCCGCCgaGCGcCGu -3'
miRNA:   3'- -GCCGcUGCUGGC--GGGCGGggCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 109501 0.67 0.566958
Target:  5'- -cGUGAUGAcguugguCCGCCCGgCCCGCGcuCGu -3'
miRNA:   3'- gcCGCUGCU-------GGCGGGCgGGGCGCu-GC- -5'
10899 3' -65.5 NC_002794.1 + 35506 0.67 0.558741
Target:  5'- aGGUGGUGGCCGCCgUGCCCaGCGuCu -3'
miRNA:   3'- gCCGCUGCUGGCGG-GCGGGgCGCuGc -5'
10899 3' -65.5 NC_002794.1 + 17138 0.67 0.558741
Target:  5'- cCGGCGAaaCGGCgGUa-GCgCCCGUGACGc -3'
miRNA:   3'- -GCCGCU--GCUGgCGggCG-GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 82571 0.67 0.558741
Target:  5'- cCGGCGA-GGCCGa-CGCCgCCGaGACGg -3'
miRNA:   3'- -GCCGCUgCUGGCggGCGG-GGCgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 143727 0.67 0.558741
Target:  5'- gGGCGuCGuccUCGCCCGCCggaCGCGcCGc -3'
miRNA:   3'- gCCGCuGCu--GGCGGGCGGg--GCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 145585 0.67 0.558741
Target:  5'- aCGGa-GCGGCgGCCgGCuCCCGCGGa- -3'
miRNA:   3'- -GCCgcUGCUGgCGGgCG-GGGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 149360 0.67 0.558741
Target:  5'- gGGCGugGACggaGUCCGCCgagaauaaaaCCGCuGACc -3'
miRNA:   3'- gCCGCugCUGg--CGGGCGG----------GGCG-CUGc -5'
10899 3' -65.5 NC_002794.1 + 127473 0.67 0.558741
Target:  5'- uCGGCcGCGACCaccgCCGCUCUGCGcCGg -3'
miRNA:   3'- -GCCGcUGCUGGcg--GGCGGGGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 75983 0.67 0.558741
Target:  5'- cCGGCGGCcuucaCGUUCGCCCCGCuucaccGGCa -3'
miRNA:   3'- -GCCGCUGcug--GCGGGCGGGGCG------CUGc -5'
10899 3' -65.5 NC_002794.1 + 146356 0.67 0.55783
Target:  5'- -cGCGGCGGCCGCCCggguaGCCguCCGCucguccaGACa -3'
miRNA:   3'- gcCGCUGCUGGCGGG-----CGG--GGCG-------CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.