miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 59 0.66 0.576124
Target:  5'- aCGGcCGACGcCCGCCaccgguaacgaaaCGCCCC-CGAgGc -3'
miRNA:   3'- -GCC-GCUGCuGGCGG-------------GCGGGGcGCUgC- -5'
10899 3' -65.5 NC_002794.1 + 328 0.71 0.345856
Target:  5'- aCGcGCG-CG-CCGCCgacaGCCCgCGCGACGg -3'
miRNA:   3'- -GC-CGCuGCuGGCGGg---CGGG-GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 627 0.68 0.496223
Target:  5'- cCGGUGugGcguucGCCuCCCGuCCCCGCcGCGc -3'
miRNA:   3'- -GCCGCugC-----UGGcGGGC-GGGGCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 843 0.66 0.595474
Target:  5'- cCGGCGcgugcguuCGGCCcaGCgCGCgCCCGCGAgGc -3'
miRNA:   3'- -GCCGCu-------GCUGG--CGgGCG-GGGCGCUgC- -5'
10899 3' -65.5 NC_002794.1 + 1493 0.66 0.595474
Target:  5'- aGGCGGCGACCgGCCUuauacgggGUCCgGaGGCGu -3'
miRNA:   3'- gCCGCUGCUGG-CGGG--------CGGGgCgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 2069 0.69 0.437058
Target:  5'- aGGaaguccgaGACGACCGCCgGCCUUauacgGCGACc -3'
miRNA:   3'- gCCg-------CUGCUGGCGGgCGGGG-----CGCUGc -5'
10899 3' -65.5 NC_002794.1 + 2255 0.67 0.522673
Target:  5'- aGGaaguccgaGGCGACCGCCgGCCcuuauacgggagCCGgGGCGu -3'
miRNA:   3'- gCCg-------CUGCUGGCGGgCGG------------GGCgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 3381 0.67 0.522673
Target:  5'- gCGGaaCGAgcCGGCCGCCUcaaccCCCCGUGACu -3'
miRNA:   3'- -GCC--GCU--GCUGGCGGGc----GGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 4505 0.66 0.623272
Target:  5'- -uGCaGACauCCGUCCGCCCCuaGACGu -3'
miRNA:   3'- gcCG-CUGcuGGCGGGCGGGGcgCUGC- -5'
10899 3' -65.5 NC_002794.1 + 6914 0.66 0.622344
Target:  5'- uCGGaUGAUGaccagaaGCCGCagCCGCCgCGCGGCa -3'
miRNA:   3'- -GCC-GCUGC-------UGGCG--GGCGGgGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 8122 0.71 0.332045
Target:  5'- gGGCGGCGGCCuCCuCGgugaCCgGCGACGg -3'
miRNA:   3'- gCCGCUGCUGGcGG-GCg---GGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 8315 0.81 0.075243
Target:  5'- aGGCGGC-ACCGCCgCGCCCCGCGcCa -3'
miRNA:   3'- gCCGCUGcUGGCGG-GCGGGGCGCuGc -5'
10899 3' -65.5 NC_002794.1 + 10307 0.67 0.553282
Target:  5'- uCGGCGAgagacuccgacgacuCGGCCGUCgucgGCgCCGCGACc -3'
miRNA:   3'- -GCCGCU---------------GCUGGCGGg---CGgGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 10994 0.69 0.453559
Target:  5'- aGGCcgcaaGugGACCGuguCCCGCaCCGCGGCc -3'
miRNA:   3'- gCCG-----CugCUGGC---GGGCGgGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 11076 0.66 0.604725
Target:  5'- uGGU-ACG-CCGCCUGCCUCGuCGuCGg -3'
miRNA:   3'- gCCGcUGCuGGCGGGCGGGGC-GCuGC- -5'
10899 3' -65.5 NC_002794.1 + 11861 1.08 0.000832
Target:  5'- cCGGCGACGACCGCCCGCCCCGCGACGg -3'
miRNA:   3'- -GCCGCUGCUGGCGGGCGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 12157 0.66 0.613993
Target:  5'- gCGGcCGAuCGcccggaucgucGCCGCCgaCGCCgCCGCGGCc -3'
miRNA:   3'- -GCC-GCU-GC-----------UGGCGG--GCGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 12230 0.71 0.325292
Target:  5'- gCGGCGcCGGCgGCgCCG-UCCGCGGCGc -3'
miRNA:   3'- -GCCGCuGCUGgCG-GGCgGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 12707 0.77 0.13356
Target:  5'- uCGGcCGugGGCUGCgCGUUCCGCGGCGa -3'
miRNA:   3'- -GCC-GCugCUGGCGgGCGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 13321 0.75 0.197631
Target:  5'- gCGaGCGACGACCGCUC-CCCCggucgggggugGCGGCGc -3'
miRNA:   3'- -GC-CGCUGCUGGCGGGcGGGG-----------CGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.