miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 13787 0.68 0.470393
Target:  5'- gGGUGGCu-CCGgCCGUCuUCGCGACGg -3'
miRNA:   3'- gCCGCUGcuGGCgGGCGG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 13823 0.68 0.48754
Target:  5'- gCGGCGACGGCCuccuccuccuccuCCCcaccgccucgucgccGCCgCCGCGACc -3'
miRNA:   3'- -GCCGCUGCUGGc------------GGG---------------CGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 14203 0.66 0.623272
Target:  5'- cCGGCccgcUGGCCGCCCcaacGCcaCCCGcCGACGa -3'
miRNA:   3'- -GCCGcu--GCUGGCGGG----CG--GGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 14495 0.8 0.082897
Target:  5'- -cGCGGCGGCgGCCCGCgCUCGCGGCGc -3'
miRNA:   3'- gcCGCUGCUGgCGGGCG-GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 14592 0.67 0.531613
Target:  5'- gGGCcguGGCGAgCGCgCCGggcaCCGCGACGg -3'
miRNA:   3'- gCCG---CUGCUgGCG-GGCgg--GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 14641 0.7 0.382157
Target:  5'- gGGC-ACGGagaCGCCgGCgCCGCGGCGu -3'
miRNA:   3'- gCCGcUGCUg--GCGGgCGgGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 14680 0.72 0.299309
Target:  5'- gCGGCGGCGGUCGCgCUGCuCCUGaCGGCGu -3'
miRNA:   3'- -GCCGCUGCUGGCG-GGCG-GGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 14794 0.75 0.184643
Target:  5'- cCGGCG-UGACCGCgaccacgucaCGCCCCGCGAUc -3'
miRNA:   3'- -GCCGCuGCUGGCGg---------GCGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 15195 0.76 0.150109
Target:  5'- gGGUGaACGACCGCCCGCgaUgGCGGCGu -3'
miRNA:   3'- gCCGC-UGCUGGCGGGCGg-GgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 16307 0.66 0.586245
Target:  5'- gCGGCcGCGGCCGgcuggaucccCCUGCCCCuggcCGGCa -3'
miRNA:   3'- -GCCGcUGCUGGC----------GGGCGGGGc---GCUGc -5'
10899 3' -65.5 NC_002794.1 + 16520 0.67 0.522673
Target:  5'- cCGGCGuCGccACCG-CCGUCCC-CGGCGu -3'
miRNA:   3'- -GCCGCuGC--UGGCgGGCGGGGcGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 16550 0.66 0.586245
Target:  5'- cCGGCGuCGccACCGCcaCCGCCgCCGCcGCc -3'
miRNA:   3'- -GCCGCuGC--UGGCG--GGCGG-GGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 16882 0.66 0.604725
Target:  5'- gCGGCaGCaACCa-CCGCCgCCGCGACa -3'
miRNA:   3'- -GCCGcUGcUGGcgGGCGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 17138 0.67 0.558741
Target:  5'- cCGGCGAaaCGGCgGUa-GCgCCCGUGACGc -3'
miRNA:   3'- -GCCGCU--GCUGgCGggCG-GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 17255 0.74 0.228015
Target:  5'- aCGGCGGCGACCcggcucgucacccggGCaCGCCgCCGcCGACGg -3'
miRNA:   3'- -GCCGCUGCUGG---------------CGgGCGG-GGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 17314 0.66 0.595474
Target:  5'- aCGGUGACGACgGUCagGCCgC-CGGCGu -3'
miRNA:   3'- -GCCGCUGCUGgCGGg-CGGgGcGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 17630 0.73 0.252224
Target:  5'- -cGCGGCGAgCGauCCCGCCgCCGCGGCc -3'
miRNA:   3'- gcCGCUGCUgGC--GGGCGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 18035 0.68 0.478929
Target:  5'- -cGUGACGGCCGCCa-CCCCGCcgGAUc -3'
miRNA:   3'- gcCGCUGCUGGCGGgcGGGGCG--CUGc -5'
10899 3' -65.5 NC_002794.1 + 18553 0.85 0.041785
Target:  5'- aCGGCGGCGACCGCgaCCGUgCCCGCGACc -3'
miRNA:   3'- -GCCGCUGCUGGCG--GGCG-GGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 18616 0.69 0.437058
Target:  5'- aCGGCacCGGCCgccccuccgacGCCCGCUCCGcCGGCa -3'
miRNA:   3'- -GCCGcuGCUGG-----------CGGGCGGGGC-GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.