miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 18706 0.67 0.511141
Target:  5'- gCGGCGGCGguccggacgucggaGCCGacgagCCGCCCCaacgccaCGACGg -3'
miRNA:   3'- -GCCGCUGC--------------UGGCg----GGCGGGGc------GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 19253 0.67 0.531613
Target:  5'- -uGUGcCGACCGgCCGCggccCCCGUGGCGc -3'
miRNA:   3'- gcCGCuGCUGGCgGGCG----GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 19331 0.74 0.219578
Target:  5'- uGGCGacccgcGCGccggucacccccucGCCGCCCGCCCCGCccggaucgGGCGg -3'
miRNA:   3'- gCCGC------UGC--------------UGGCGGGCGGGGCG--------CUGC- -5'
10899 3' -65.5 NC_002794.1 + 19466 0.77 0.139641
Target:  5'- gCGGCGGCGGCgggacccgccgguCGCCCGCaCCGaCGACGg -3'
miRNA:   3'- -GCCGCUGCUG-------------GCGGGCGgGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 19601 0.66 0.577043
Target:  5'- cCGGCGAgCGGCCGa--GCCaCCGacuCGACGa -3'
miRNA:   3'- -GCCGCU-GCUGGCgggCGG-GGC---GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 20553 0.66 0.604725
Target:  5'- gGGCGAcCGGaucCCGCCguCGCUCCGCaACa -3'
miRNA:   3'- gCCGCU-GCU---GGCGG--GCGGGGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 20985 0.66 0.586245
Target:  5'- -aGCGGCGGCgGCa-GCgaCCGCGGCGg -3'
miRNA:   3'- gcCGCUGCUGgCGggCGg-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 21374 0.7 0.389715
Target:  5'- gCGGCGGCGGCCGCCgucucuuCCUCG-GACa -3'
miRNA:   3'- -GCCGCUGCUGGCGGgc-----GGGGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 21671 0.76 0.172414
Target:  5'- gCGGCGGCGGuauUCGCCCGCUCCGgcuccccgccuCGGCGu -3'
miRNA:   3'- -GCCGCUGCU---GGCGGGCGGGGC-----------GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 21933 0.77 0.148028
Target:  5'- gCGGCGGCGcggcgcucgucgaagGCCGUcggCCGCuCCCGCGGCGc -3'
miRNA:   3'- -GCCGCUGC---------------UGGCG---GGCG-GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 22541 0.7 0.360075
Target:  5'- uCGG-GAUccgGACCGUCCGCCaCCGcCGACa -3'
miRNA:   3'- -GCCgCUG---CUGGCGGGCGG-GGC-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 22910 0.75 0.184643
Target:  5'- aCGGCGGCGACCGCggCCGCCaaaC-CGGCa -3'
miRNA:   3'- -GCCGCUGCUGGCG--GGCGGg--GcGCUGc -5'
10899 3' -65.5 NC_002794.1 + 23058 0.7 0.397371
Target:  5'- cCGaGUGACGcUCaGCCCGCCCUcgGCGAUGa -3'
miRNA:   3'- -GC-CGCUGCuGG-CGGGCGGGG--CGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 23637 0.66 0.595474
Target:  5'- gCGGCccuCGACCcccUCCGCCCCccgaGCGACc -3'
miRNA:   3'- -GCCGcu-GCUGGc--GGGCGGGG----CGCUGc -5'
10899 3' -65.5 NC_002794.1 + 24032 0.82 0.066141
Target:  5'- uCGGCGACGGcggucccuccccguCCGCCCGCCCCG-GACc -3'
miRNA:   3'- -GCCGCUGCU--------------GGCGGGCGGGGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 26107 0.71 0.338899
Target:  5'- cCGGCGAUcGCCguggGCCUGCCUCGaCGACc -3'
miRNA:   3'- -GCCGCUGcUGG----CGGGCGGGGC-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 29214 0.7 0.360075
Target:  5'- gCGGuCGGCGGCCGUCgGCCgCCGagcagaGAUGa -3'
miRNA:   3'- -GCC-GCUGCUGGCGGgCGG-GGCg-----CUGC- -5'
10899 3' -65.5 NC_002794.1 + 30380 0.72 0.280896
Target:  5'- uGGCGAucgucaUGGCCGCCCGCgaCGUGAUGc -3'
miRNA:   3'- gCCGCU------GCUGGCGGGCGggGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 30934 0.66 0.613993
Target:  5'- aGGCuGCGcCCGCCgCGCCgCGaGACa -3'
miRNA:   3'- gCCGcUGCuGGCGG-GCGGgGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 31392 0.67 0.540606
Target:  5'- uCGGCGGCc-CCGCCgCGCCcgCCGCGcCc -3'
miRNA:   3'- -GCCGCUGcuGGCGG-GCGG--GGCGCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.