miRNA display CGI


Results 61 - 80 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 32282 0.77 0.13356
Target:  5'- uCGGCGAgCGacGCCG-CCGCCgCCGCGGCGg -3'
miRNA:   3'- -GCCGCU-GC--UGGCgGGCGG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 32441 0.7 0.389715
Target:  5'- gCGGCGAUcACCGUCgUGCCC-GUGACGa -3'
miRNA:   3'- -GCCGCUGcUGGCGG-GCGGGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 32644 0.69 0.445266
Target:  5'- gGGCGACGACCggggcgacgGCgCCGUCCC-CGuCGu -3'
miRNA:   3'- gCCGCUGCUGG---------CG-GGCGGGGcGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 32707 0.7 0.397371
Target:  5'- gGGCGACucGCCGCCa--CCCGuCGGCGg -3'
miRNA:   3'- gCCGCUGc-UGGCGGgcgGGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 34083 0.72 0.268549
Target:  5'- cCGGCGGCcgggcagccgucgGGCgGCCCGgaCCGCGACGu -3'
miRNA:   3'- -GCCGCUG-------------CUGgCGGGCggGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 34339 0.8 0.082897
Target:  5'- aGGCGACGGCCGCgCCGUUCCGCccgcucuaccugGACGa -3'
miRNA:   3'- gCCGCUGCUGGCG-GGCGGGGCG------------CUGC- -5'
10899 3' -65.5 NC_002794.1 + 34729 0.66 0.595474
Target:  5'- aGGCGcggGCGGCCGCagaGCg-CGCGACGg -3'
miRNA:   3'- gCCGC---UGCUGGCGgg-CGggGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 34770 0.7 0.360075
Target:  5'- gCGGC-ACGGCCGCCCGCgCCaGCcGAg- -3'
miRNA:   3'- -GCCGcUGCUGGCGGGCGgGG-CG-CUgc -5'
10899 3' -65.5 NC_002794.1 + 35506 0.67 0.558741
Target:  5'- aGGUGGUGGCCGCCgUGCCCaGCGuCu -3'
miRNA:   3'- gCCGCUGCUGGCGG-GCGGGgCGCuGc -5'
10899 3' -65.5 NC_002794.1 + 35648 0.66 0.577043
Target:  5'- cCGG-GACGGgCGCCCGguCUCCGaCGugGu -3'
miRNA:   3'- -GCCgCUGCUgGCGGGC--GGGGC-GCugC- -5'
10899 3' -65.5 NC_002794.1 + 35821 0.67 0.531613
Target:  5'- cCGGUuuccgGGCcGCCGCCacgaacccccgCGCCCCGCG-CGa -3'
miRNA:   3'- -GCCG-----CUGcUGGCGG-----------GCGGGGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 36016 0.67 0.513793
Target:  5'- gGGCGGCGgaauccGCCGUCCgGCCCgGCcGCc -3'
miRNA:   3'- gCCGCUGC------UGGCGGG-CGGGgCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 36263 0.73 0.252224
Target:  5'- uGGCGuCGuguaaCGCCgCGUCCCGCGACu -3'
miRNA:   3'- gCCGCuGCug---GCGG-GCGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 36352 0.73 0.263393
Target:  5'- cCGGCGugcGCGGCCaccggGUgCGCgCCCGCGGCGa -3'
miRNA:   3'- -GCCGC---UGCUGG-----CGgGCG-GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 36763 0.67 0.54965
Target:  5'- uGGCgGACGGCCacccagcuguaGCCgGCCgCCGUGuACGc -3'
miRNA:   3'- gCCG-CUGCUGG-----------CGGgCGG-GGCGC-UGC- -5'
10899 3' -65.5 NC_002794.1 + 36910 0.74 0.202134
Target:  5'- aGGUcGCGG-CGCCgGCCCCGCGACc -3'
miRNA:   3'- gCCGcUGCUgGCGGgCGGGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 37461 0.71 0.338899
Target:  5'- uCGGCGAagaCGAUC-CCCaggaaGCCCUGCGGCGc -3'
miRNA:   3'- -GCCGCU---GCUGGcGGG-----CGGGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 37735 0.73 0.257759
Target:  5'- gCGGCGGCG-CCGCCgGCggcggCGCGGCGg -3'
miRNA:   3'- -GCCGCUGCuGGCGGgCGgg---GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 37767 0.68 0.491004
Target:  5'- cCGGCGggaGCGGCCGUCgucgucggccgcaggCGCCUCGacgaGACGg -3'
miRNA:   3'- -GCCGC---UGCUGGCGG---------------GCGGGGCg---CUGC- -5'
10899 3' -65.5 NC_002794.1 + 37934 0.71 0.338899
Target:  5'- -cGCcGCGGCCGCCCGUgCCuCGGCGa -3'
miRNA:   3'- gcCGcUGCUGGCGGGCGgGGcGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.