miRNA display CGI


Results 1 - 20 of 431 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 195536 0.66 0.611211
Target:  5'- aCGGCgGACG-CCGCacccacgcccugagCCGCCCCGagccgcccCGACc -3'
miRNA:   3'- -GCCG-CUGCuGGCG--------------GGCGGGGC--------GCUGc -5'
10899 3' -65.5 NC_002794.1 + 195263 0.66 0.577043
Target:  5'- cCGGCGgggacugcaGCGACaCGCaCCGaCCCGCGcACc -3'
miRNA:   3'- -GCCGC---------UGCUG-GCG-GGCgGGGCGC-UGc -5'
10899 3' -65.5 NC_002794.1 + 195110 0.72 0.29307
Target:  5'- aCGGCGucuCGugCGCCCGCggCGCGcGCGg -3'
miRNA:   3'- -GCCGCu--GCugGCGGGCGggGCGC-UGC- -5'
10899 3' -65.5 NC_002794.1 + 194923 0.68 0.478929
Target:  5'- -aGCaGCGGCCGCaCCaGCUCCGaCGGCGa -3'
miRNA:   3'- gcCGcUGCUGGCG-GG-CGGGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 194843 0.68 0.492741
Target:  5'- cCGGCGucuccagccgcacCGuCUGCCCGCgCCgCGCGAUGc -3'
miRNA:   3'- -GCCGCu------------GCuGGCGGGCG-GG-GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 194515 0.66 0.623272
Target:  5'- gCGGCccGCGuGCCGCCgGCCCagcaGCGcCGc -3'
miRNA:   3'- -GCCGc-UGC-UGGCGGgCGGGg---CGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 194137 0.7 0.374697
Target:  5'- aGGCaGCGGCCGCagcaGCgCCCGCGAg- -3'
miRNA:   3'- gCCGcUGCUGGCGgg--CG-GGGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 193981 0.66 0.577043
Target:  5'- -cGCcGCGGCCGCuaccgCCGCCCC-CGGCu -3'
miRNA:   3'- gcCGcUGCUGGCG-----GGCGGGGcGCUGc -5'
10899 3' -65.5 NC_002794.1 + 193752 0.82 0.061921
Target:  5'- uCGGCGAgCGACCGCCgGCCCCGCu--- -3'
miRNA:   3'- -GCCGCU-GCUGGCGGgCGGGGCGcugc -5'
10899 3' -65.5 NC_002794.1 + 193586 0.66 0.604725
Target:  5'- cCGGUGGCGGCUcaCCGUCguguagcguaCCGCGGCGc -3'
miRNA:   3'- -GCCGCUGCUGGcgGGCGG----------GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 193282 0.74 0.221047
Target:  5'- gCGGCGuGCGccgguagucGCCGUCCGCUCCGCGcCGc -3'
miRNA:   3'- -GCCGC-UGC---------UGGCGGGCGGGGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 192635 0.69 0.453559
Target:  5'- gGGCGGCcgcuccaGCCGCgCCGCCgCGCGcucGCGc -3'
miRNA:   3'- gCCGCUGc------UGGCG-GGCGGgGCGC---UGC- -5'
10899 3' -65.5 NC_002794.1 + 192385 0.7 0.40046
Target:  5'- gGGCuGACcgccACCGCCgCGCCgggguagucgaaacgCCGCGACGg -3'
miRNA:   3'- gCCG-CUGc---UGGCGG-GCGG---------------GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 192255 0.66 0.623272
Target:  5'- aCGGCG-CGguuCGCUCGUcuCUCGCGACGa -3'
miRNA:   3'- -GCCGCuGCug-GCGGGCG--GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 192011 0.67 0.54965
Target:  5'- gCGGCGGUGGCCGCggCUGCUguuuCUGUGGCGg -3'
miRNA:   3'- -GCCGCUGCUGGCG--GGCGG----GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 191798 0.66 0.611211
Target:  5'- -cGCu-CGACCGCCCGCUcggccgcucgaggaCCGCGAg- -3'
miRNA:   3'- gcCGcuGCUGGCGGGCGG--------------GGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 191681 0.68 0.504975
Target:  5'- gCGGCGGCGGCgUGCCCuCgUCGCGGa- -3'
miRNA:   3'- -GCCGCUGCUG-GCGGGcGgGGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 191481 0.67 0.55783
Target:  5'- gCGGCagccacgGGCGAUCGUCCGCCaCCGaGAgGu -3'
miRNA:   3'- -GCCG-------CUGCUGGCGGGCGG-GGCgCUgC- -5'
10899 3' -65.5 NC_002794.1 + 191365 0.71 0.332045
Target:  5'- uCGGgGACgGGCCGgacccUCCGCgCCCGCGGCc -3'
miRNA:   3'- -GCCgCUG-CUGGC-----GGGCG-GGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 190761 0.79 0.098106
Target:  5'- gGGCGGCGGCCGCgCGUCCCGguaGAUGa -3'
miRNA:   3'- gCCGCUGCUGGCGgGCGGGGCg--CUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.