miRNA display CGI


Results 21 - 40 of 431 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 190728 0.7 0.352915
Target:  5'- cCGGaGACGcAgCGCCCGCCgCCGUcucGACGg -3'
miRNA:   3'- -GCCgCUGC-UgGCGGGCGG-GGCG---CUGC- -5'
10899 3' -65.5 NC_002794.1 + 189958 0.7 0.374697
Target:  5'- aCGGacCGACGgacggGCCGCCCGCUCgCcCGACGg -3'
miRNA:   3'- -GCC--GCUGC-----UGGCGGGCGGG-GcGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 189916 0.73 0.236205
Target:  5'- -cGCG-CGACCGCCCGCUCgCcCGACGg -3'
miRNA:   3'- gcCGCuGCUGGCGGGCGGG-GcGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 189590 0.67 0.531613
Target:  5'- cCGGCGccccuuagccCGuCCGCCCGagaCCCGcCGACu -3'
miRNA:   3'- -GCCGCu---------GCuGGCGGGCg--GGGC-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 188787 0.67 0.567873
Target:  5'- gCGGUaGCGGCCGgcCCCGCCgaGCGcCGu -3'
miRNA:   3'- -GCCGcUGCUGGC--GGGCGGggCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 188342 0.75 0.197631
Target:  5'- cCGGCGGCGccguCgCGCCCGUCCgGcCGGCGg -3'
miRNA:   3'- -GCCGCUGCu---G-GCGGGCGGGgC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 187903 0.71 0.345856
Target:  5'- gCGGUGcCGcUCGCCCGCCgggccccgCCGCGACc -3'
miRNA:   3'- -GCCGCuGCuGGCGGGCGG--------GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 187585 0.73 0.235686
Target:  5'- uCGGCG-CGGCCGCCgucgcgaCGCCCgGCGuCGc -3'
miRNA:   3'- -GCCGCuGCUGGCGG-------GCGGGgCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 187509 0.69 0.412968
Target:  5'- gCGGCcagGGCGcCCGCggaggaacuccCCGCCgCCGCGACc -3'
miRNA:   3'- -GCCG---CUGCuGGCG-----------GGCGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 186527 0.66 0.604725
Target:  5'- gCGGCaccuucuccaGGCGGCCuucCCCGCgCCCGUuGCGa -3'
miRNA:   3'- -GCCG----------CUGCUGGc--GGGCG-GGGCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 186491 0.68 0.496223
Target:  5'- gGGCccGGCGGCgCGCCU-CCCCGcCGugGa -3'
miRNA:   3'- gCCG--CUGCUG-GCGGGcGGGGC-GCugC- -5'
10899 3' -65.5 NC_002794.1 + 186347 0.7 0.352915
Target:  5'- gCGGCGGCGACgUGCCCGaCCagCCGCcGCc -3'
miRNA:   3'- -GCCGCUGCUG-GCGGGC-GG--GGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 186284 0.71 0.338899
Target:  5'- gCGGCGGCaccgcggccaGGCgGCCgGUCgCCGCGGCGc -3'
miRNA:   3'- -GCCGCUG----------CUGgCGGgCGG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 185765 0.75 0.193215
Target:  5'- cCGGCG-CGGCCGCCCGUCacaCGuCGGCc -3'
miRNA:   3'- -GCCGCuGCUGGCGGGCGGg--GC-GCUGc -5'
10899 3' -65.5 NC_002794.1 + 185552 0.66 0.613993
Target:  5'- cCGGCcGCG--CGcCCCGCCCUGCcGCGg -3'
miRNA:   3'- -GCCGcUGCugGC-GGGCGGGGCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 185475 0.73 0.256088
Target:  5'- gGGCGGCGGCCGCggcgaggggaCCGCCuauauauucgaucuCCGCGuCGg -3'
miRNA:   3'- gCCGCUGCUGGCG----------GGCGG--------------GGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 185338 0.7 0.360075
Target:  5'- -cGCGuCGACCGCUcgcgCGCCgCCGCGAgCGg -3'
miRNA:   3'- gcCGCuGCUGGCGG----GCGG-GGCGCU-GC- -5'
10899 3' -65.5 NC_002794.1 + 184580 0.72 0.29307
Target:  5'- gCGGCGGCGGCgGCCaCGCgCgGCcGCGg -3'
miRNA:   3'- -GCCGCUGCUGgCGG-GCGgGgCGcUGC- -5'
10899 3' -65.5 NC_002794.1 + 184533 0.72 0.292451
Target:  5'- gGGCGACG-CCGCCCaCCgCCGCcucuucgGACGc -3'
miRNA:   3'- gCCGCUGCuGGCGGGcGG-GGCG-------CUGC- -5'
10899 3' -65.5 NC_002794.1 + 184481 0.67 0.522673
Target:  5'- aCGGCGcGCGGggccccggaCGCCCgggcggcgcggGCCCCGCGcGCGg -3'
miRNA:   3'- -GCCGC-UGCUg--------GCGGG-----------CGGGGCGC-UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.