miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 184195 0.69 0.405122
Target:  5'- cCGGCGAgGcCCGCucCCGCCCC-CGAa- -3'
miRNA:   3'- -GCCGCUgCuGGCG--GGCGGGGcGCUgc -5'
10899 3' -65.5 NC_002794.1 + 184161 0.71 0.345856
Target:  5'- cCGGCGACGGcgucuCCaCCCGacaCCGCGGCGc -3'
miRNA:   3'- -GCCGCUGCU-----GGcGGGCgg-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 184101 0.67 0.54965
Target:  5'- aCGGCGA--ACgCGCCagCGCCCCGCucgccGGCGu -3'
miRNA:   3'- -GCCGCUgcUG-GCGG--GCGGGGCG-----CUGC- -5'
10899 3' -65.5 NC_002794.1 + 183684 0.73 0.246787
Target:  5'- aCGG-GuCGAgCGCCCGCCgCgCGCGGCGg -3'
miRNA:   3'- -GCCgCuGCUgGCGGGCGG-G-GCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 183618 0.66 0.595474
Target:  5'- gCGGcCGGCGcCC-CCgCGCCCC-CGACu -3'
miRNA:   3'- -GCC-GCUGCuGGcGG-GCGGGGcGCUGc -5'
10899 3' -65.5 NC_002794.1 + 183527 0.67 0.531613
Target:  5'- gCGGCcguGCGcgccCCGUCCGCCCgGgGACa -3'
miRNA:   3'- -GCCGc--UGCu---GGCGGGCGGGgCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 183445 0.74 0.230548
Target:  5'- cCGGCGcccgccaccgccgGCGcCCGCCCGCCgcgaguCCGCGGCc -3'
miRNA:   3'- -GCCGC-------------UGCuGGCGGGCGG------GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 183124 0.68 0.478929
Target:  5'- uCGGCGGCGGCU-CCCguacgcgcaGCUCCGCgGACa -3'
miRNA:   3'- -GCCGCUGCUGGcGGG---------CGGGGCG-CUGc -5'
10899 3' -65.5 NC_002794.1 + 182991 0.72 0.305651
Target:  5'- aCGGcCGGCGcuucGCCGCgggCGCCCCGCGcGCGc -3'
miRNA:   3'- -GCC-GCUGC----UGGCGg--GCGGGGCGC-UGC- -5'
10899 3' -65.5 NC_002794.1 + 182368 0.69 0.420907
Target:  5'- gGGCGcACGGCCcCCCGgucCCCCGCucaGCGg -3'
miRNA:   3'- gCCGC-UGCUGGcGGGC---GGGGCGc--UGC- -5'
10899 3' -65.5 NC_002794.1 + 181745 0.66 0.595474
Target:  5'- gCGaGCGGcCGGCCaGCCCGCUgaCGcCGAUGg -3'
miRNA:   3'- -GC-CGCU-GCUGG-CGGGCGGg-GC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 181593 0.66 0.586245
Target:  5'- gGGCcGCGACCgGgUCGCCCCGUuGCc -3'
miRNA:   3'- gCCGcUGCUGG-CgGGCGGGGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 181441 0.71 0.323954
Target:  5'- uCGGCGAgGgGCCGCCCGgaggacgucuuaCCCGCGcCGa -3'
miRNA:   3'- -GCCGCUgC-UGGCGGGCg-----------GGGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 181236 0.75 0.193215
Target:  5'- cCGGCGACGGCgCGCCUuCCaCCGCG-CGu -3'
miRNA:   3'- -GCCGCUGCUG-GCGGGcGG-GGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 180736 0.7 0.382157
Target:  5'- gCGGaCGACG-CCGUCCgGCUCCuCGGCGg -3'
miRNA:   3'- -GCC-GCUGCuGGCGGG-CGGGGcGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 180672 0.66 0.604725
Target:  5'- cCGGgGAacucgcCGGCCGCUcccggCGCCCgGCGgGCGg -3'
miRNA:   3'- -GCCgCU------GCUGGCGG-----GCGGGgCGC-UGC- -5'
10899 3' -65.5 NC_002794.1 + 180024 0.72 0.286932
Target:  5'- aCGGCcGCGGCCGUCCGaCCCGCaucACGu -3'
miRNA:   3'- -GCCGcUGCUGGCGGGCgGGGCGc--UGC- -5'
10899 3' -65.5 NC_002794.1 + 179658 0.66 0.604725
Target:  5'- aGGCG--GGCuCGCCgGacggcaCCCGCGGCGg -3'
miRNA:   3'- gCCGCugCUG-GCGGgCg-----GGGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 179614 0.74 0.221047
Target:  5'- gCGGCGcgaGCGACUGCCgGgCgCUGCGACGg -3'
miRNA:   3'- -GCCGC---UGCUGGCGGgCgG-GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 179443 0.69 0.453559
Target:  5'- aGGCGugGACCa-CCGCCUcgguCGUGAUGu -3'
miRNA:   3'- gCCGCugCUGGcgGGCGGG----GCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.