Results 41 - 60 of 431 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10899 | 3' | -65.5 | NC_002794.1 | + | 194515 | 0.66 | 0.623272 |
Target: 5'- gCGGCccGCGuGCCGCCgGCCCagcaGCGcCGc -3' miRNA: 3'- -GCCGc-UGC-UGGCGGgCGGGg---CGCuGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 62819 | 0.66 | 0.623272 |
Target: 5'- cCGGCGcCGuacuuUCGCCCgGUCCC-CGACa -3' miRNA: 3'- -GCCGCuGCu----GGCGGG-CGGGGcGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 90201 | 0.66 | 0.623272 |
Target: 5'- aCGGUGcccGCGccuCCGCCCGCCgCGcCGGa- -3' miRNA: 3'- -GCCGC---UGCu--GGCGGGCGGgGC-GCUgc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 133925 | 0.66 | 0.623272 |
Target: 5'- aCGGCGGCcg-CGCCCGUCCaguuGCGGgGu -3' miRNA: 3'- -GCCGCUGcugGCGGGCGGGg---CGCUgC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 82774 | 0.66 | 0.623272 |
Target: 5'- -cGCGAacccucgcaacCGACCGCCgcguccacgCGCgCCGCGACc -3' miRNA: 3'- gcCGCU-----------GCUGGCGG---------GCGgGGCGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 80899 | 0.66 | 0.620488 |
Target: 5'- cCGGCGgcccucgacgacccGCGcCCGCUCGaCCCCGaaacCGACu -3' miRNA: 3'- -GCCGC--------------UGCuGGCGGGC-GGGGC----GCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 63803 | 0.66 | 0.613993 |
Target: 5'- -cGCGACGAcgucCCGCaCCGaCUUCGCGAuCGg -3' miRNA: 3'- gcCGCUGCU----GGCG-GGC-GGGGCGCU-GC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 195536 | 0.66 | 0.611211 |
Target: 5'- aCGGCgGACG-CCGCacccacgcccugagCCGCCCCGagccgcccCGACc -3' miRNA: 3'- -GCCG-CUGCuGGCG--------------GGCGGGGC--------GCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 12157 | 0.66 | 0.613993 |
Target: 5'- gCGGcCGAuCGcccggaucgucGCCGCCgaCGCCgCCGCGGCc -3' miRNA: 3'- -GCC-GCU-GC-----------UGGCGG--GCGG-GGCGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 52168 | 0.66 | 0.613993 |
Target: 5'- aGGCGGCGGCgGUgCGCaucgCCUGCGcCa -3' miRNA: 3'- gCCGCUGCUGgCGgGCG----GGGCGCuGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 30934 | 0.66 | 0.613993 |
Target: 5'- aGGCuGCGcCCGCCgCGCCgCGaGACa -3' miRNA: 3'- gCCGcUGCuGGCGG-GCGGgGCgCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 53538 | 0.66 | 0.613993 |
Target: 5'- gGcGCGGCGGCCGCacaGCCCguggaCGUaGACGg -3' miRNA: 3'- gC-CGCUGCUGGCGgg-CGGG-----GCG-CUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 118510 | 0.66 | 0.613993 |
Target: 5'- gGGcCGACcagGACCGCCCGCUgCUGCu-CGa -3' miRNA: 3'- gCC-GCUG---CUGGCGGGCGG-GGCGcuGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 107058 | 0.66 | 0.613993 |
Target: 5'- aGGCGGCGGgCGCggCGCCgCCGgcaugucggagcCGACGg -3' miRNA: 3'- gCCGCUGCUgGCGg-GCGG-GGC------------GCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 95838 | 0.66 | 0.613993 |
Target: 5'- gCGGCGGCGGCgGCCgGggagGCGGCGg -3' miRNA: 3'- -GCCGCUGCUGgCGGgCggggCGCUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 90677 | 0.66 | 0.613993 |
Target: 5'- cCGGCcGCGugGCUGUUCGUgugCCCGCGGCa -3' miRNA: 3'- -GCCGcUGC--UGGCGGGCG---GGGCGCUGc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 118271 | 0.66 | 0.613993 |
Target: 5'- gGGCGGCGG-CGCCgGCgucggggaCCGCGcCGg -3' miRNA: 3'- gCCGCUGCUgGCGGgCGg-------GGCGCuGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 185552 | 0.66 | 0.613993 |
Target: 5'- cCGGCcGCG--CGcCCCGCCCUGCcGCGg -3' miRNA: 3'- -GCCGcUGCugGC-GGGCGGGGCGcUGC- -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 44555 | 0.66 | 0.613993 |
Target: 5'- cCGGCGGCGG-CGCCCGUugacgUCaCGCGGg- -3' miRNA: 3'- -GCCGCUGCUgGCGGGCG-----GG-GCGCUgc -5' |
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10899 | 3' | -65.5 | NC_002794.1 | + | 150851 | 0.66 | 0.613993 |
Target: 5'- -aGCGGCGGCCGCgucuaCGCCUauaGcCGGCGc -3' miRNA: 3'- gcCGCUGCUGGCGg----GCGGGg--C-GCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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