miRNA display CGI


Results 61 - 80 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10899 3' -65.5 NC_002794.1 + 118271 0.66 0.613993
Target:  5'- gGGCGGCGG-CGCCgGCgucggggaCCGCGcCGg -3'
miRNA:   3'- gCCGCUGCUgGCGGgCGg-------GGCGCuGC- -5'
10899 3' -65.5 NC_002794.1 + 90677 0.66 0.613993
Target:  5'- cCGGCcGCGugGCUGUUCGUgugCCCGCGGCa -3'
miRNA:   3'- -GCCGcUGC--UGGCGGGCG---GGGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 193586 0.66 0.604725
Target:  5'- cCGGUGGCGGCUcaCCGUCguguagcguaCCGCGGCGc -3'
miRNA:   3'- -GCCGCUGCUGGcgGGCGG----------GGCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 60007 0.66 0.604725
Target:  5'- cCGGCGcCGAgCGCaCCGaCCUGCucGACGc -3'
miRNA:   3'- -GCCGCuGCUgGCG-GGCgGGGCG--CUGC- -5'
10899 3' -65.5 NC_002794.1 + 51062 0.66 0.604725
Target:  5'- aCGGCGGCGACgGCgaCCuCCgaGCGugGc -3'
miRNA:   3'- -GCCGCUGCUGgCG--GGcGGggCGCugC- -5'
10899 3' -65.5 NC_002794.1 + 180672 0.66 0.604725
Target:  5'- cCGGgGAacucgcCGGCCGCUcccggCGCCCgGCGgGCGg -3'
miRNA:   3'- -GCCgCU------GCUGGCGG-----GCGGGgCGC-UGC- -5'
10899 3' -65.5 NC_002794.1 + 107524 0.66 0.604725
Target:  5'- aCGcCGACGGCCgGCgCgGCgCCgGCGGCGa -3'
miRNA:   3'- -GCcGCUGCUGG-CG-GgCG-GGgCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 106391 0.66 0.604725
Target:  5'- aCGGCgGGCGaACgGUCgGaCCCCGgCGGCGc -3'
miRNA:   3'- -GCCG-CUGC-UGgCGGgC-GGGGC-GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 98079 0.66 0.604725
Target:  5'- uGGCGGCG-CUGUCCGCUuuGgCGGg- -3'
miRNA:   3'- gCCGCUGCuGGCGGGCGGggC-GCUgc -5'
10899 3' -65.5 NC_002794.1 + 20553 0.66 0.604725
Target:  5'- gGGCGAcCGGaucCCGCCguCGCUCCGCaACa -3'
miRNA:   3'- gCCGCU-GCU---GGCGG--GCGGGGCGcUGc -5'
10899 3' -65.5 NC_002794.1 + 79007 0.66 0.605651
Target:  5'- gCGGCGAcuccaucccgcccuCGGCCGCcuucugccggcccggCCGCuCCCGCG-Cu -3'
miRNA:   3'- -GCCGCU--------------GCUGGCG---------------GGCG-GGGCGCuGc -5'
10899 3' -65.5 NC_002794.1 + 191798 0.66 0.611211
Target:  5'- -cGCu-CGACCGCCCGCUcggccgcucgaggaCCGCGAg- -3'
miRNA:   3'- gcCGcuGCUGGCGGGCGG--------------GGCGCUgc -5'
10899 3' -65.5 NC_002794.1 + 95838 0.66 0.613993
Target:  5'- gCGGCGGCGGCgGCCgGggagGCGGCGg -3'
miRNA:   3'- -GCCGCUGCUGgCGGgCggggCGCUGC- -5'
10899 3' -65.5 NC_002794.1 + 107058 0.66 0.613993
Target:  5'- aGGCGGCGGgCGCggCGCCgCCGgcaugucggagcCGACGg -3'
miRNA:   3'- gCCGCUGCUgGCGg-GCGG-GGC------------GCUGC- -5'
10899 3' -65.5 NC_002794.1 + 118510 0.66 0.613993
Target:  5'- gGGcCGACcagGACCGCCCGCUgCUGCu-CGa -3'
miRNA:   3'- gCC-GCUG---CUGGCGGGCGG-GGCGcuGC- -5'
10899 3' -65.5 NC_002794.1 + 53538 0.66 0.613993
Target:  5'- gGcGCGGCGGCCGCacaGCCCguggaCGUaGACGg -3'
miRNA:   3'- gC-CGCUGCUGGCGgg-CGGG-----GCG-CUGC- -5'
10899 3' -65.5 NC_002794.1 + 30934 0.66 0.613993
Target:  5'- aGGCuGCGcCCGCCgCGCCgCGaGACa -3'
miRNA:   3'- gCCGcUGCuGGCGG-GCGGgGCgCUGc -5'
10899 3' -65.5 NC_002794.1 + 52168 0.66 0.613993
Target:  5'- aGGCGGCGGCgGUgCGCaucgCCUGCGcCa -3'
miRNA:   3'- gCCGCUGCUGgCGgGCG----GGGCGCuGc -5'
10899 3' -65.5 NC_002794.1 + 12157 0.66 0.613993
Target:  5'- gCGGcCGAuCGcccggaucgucGCCGCCgaCGCCgCCGCGGCc -3'
miRNA:   3'- -GCC-GCU-GC-----------UGGCGG--GCGG-GGCGCUGc -5'
10899 3' -65.5 NC_002794.1 + 195536 0.66 0.611211
Target:  5'- aCGGCgGACG-CCGCacccacgcccugagCCGCCCCGagccgcccCGACc -3'
miRNA:   3'- -GCCG-CUGCuGGCG--------------GGCGGGGC--------GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.