Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1090 | 5' | -58.7 | NC_000929.1 | + | 11604 | 0.75 | 0.114466 |
Target: 5'- aCCCGCCUGuauuGUGUGCCGGUuGCGGUc- -3' miRNA: 3'- -GGGUGGGC----CGCAUGGCCAuUGCCGug -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 16420 | 0.66 | 0.455228 |
Target: 5'- aCCCGuaCGGCGUAUgGGgcagGACGuuauGCGCa -3' miRNA: 3'- -GGGUggGCCGCAUGgCCa---UUGC----CGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 25659 | 0.66 | 0.445429 |
Target: 5'- --uGCCgGGCGUGCCGuUGGCGGg-- -3' miRNA: 3'- gggUGGgCCGCAUGGCcAUUGCCgug -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 30212 | 0.66 | 0.435749 |
Target: 5'- aCCGCaCUGGC-UGCCGGUGAa-GCAg -3' miRNA: 3'- gGGUG-GGCCGcAUGGCCAUUgcCGUg -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 17176 | 0.67 | 0.411162 |
Target: 5'- aCCACCaguugcuguauguugUGGCa-ACCcGUGACGGCACg -3' miRNA: 3'- gGGUGG---------------GCCGcaUGGcCAUUGCCGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 5344 | 0.67 | 0.371576 |
Target: 5'- gCgUAUCUGGCGcgauUACCGGuUAAUGGCAa -3' miRNA: 3'- -GgGUGGGCCGC----AUGGCC-AUUGCCGUg -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 19756 | 0.68 | 0.321929 |
Target: 5'- -gCACCCGcCGUgcuGCCGGUuACGGCu- -3' miRNA: 3'- ggGUGGGCcGCA---UGGCCAuUGCCGug -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 24650 | 0.69 | 0.299771 |
Target: 5'- gCCCGCCagcaaaucacagCGGCGgaugccaaccugcugACCGGUuACGGUAUc -3' miRNA: 3'- -GGGUGG------------GCCGCa--------------UGGCCAuUGCCGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 22118 | 0.69 | 0.284474 |
Target: 5'- gCCAgCCuGauuUACCGGUGACGGCAg -3' miRNA: 3'- gGGUgGGcCgc-AUGGCCAUUGCCGUg -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 9332 | 0.7 | 0.270485 |
Target: 5'- -gCGCCCcGCGacuaUACCGGUcauGAUGGCACc -3' miRNA: 3'- ggGUGGGcCGC----AUGGCCA---UUGCCGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 14091 | 0.73 | 0.165738 |
Target: 5'- cCCCGuuuuaCCGGCGcugcauuugaugccACCGGUAACGGCGg -3' miRNA: 3'- -GGGUg----GGCCGCa-------------UGGCCAUUGCCGUg -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 25529 | 1.11 | 0.000207 |
Target: 5'- cCCCACCCGGCGUACCGGUAACGGCACg -3' miRNA: 3'- -GGGUGGGCCGCAUGGCCAUUGCCGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 24100 | 0.72 | 0.173086 |
Target: 5'- gCCugCUGGCaGUGCCGGaaaaAGCGGgACa -3' miRNA: 3'- gGGugGGCCG-CAUGGCCa---UUGCCgUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 27258 | 0.72 | 0.187147 |
Target: 5'- cCCCG-CUGGCuGUGCCGGUuguggugGACGGgGCa -3' miRNA: 3'- -GGGUgGGCCG-CAUGGCCA-------UUGCCgUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 29130 | 0.7 | 0.270485 |
Target: 5'- aUCACCCGGUucaagauuuGUcgGgCGGUAGCGGCGg -3' miRNA: 3'- gGGUGGGCCG---------CA--UgGCCAUUGCCGUg -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 27624 | 0.69 | 0.306519 |
Target: 5'- gCCAguUCCGGCuGUuuCCGGUGAacCGGUACa -3' miRNA: 3'- gGGU--GGGCCG-CAu-GGCCAUU--GCCGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 26718 | 0.67 | 0.377698 |
Target: 5'- uCCCAgagaaCCGGUuacagcaacggccuGUGCCGGU-ACGGCuGCa -3' miRNA: 3'- -GGGUg----GGCCG--------------CAUGGCCAuUGCCG-UG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 25976 | 0.67 | 0.398284 |
Target: 5'- aCCCAgcggUCCGGCaagGCUGccAACGGCACc -3' miRNA: 3'- -GGGU----GGGCCGca-UGGCcaUUGCCGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 27050 | 0.66 | 0.435749 |
Target: 5'- cCCCugUCuGCcUG-CGGUGGCGGCAUg -3' miRNA: 3'- -GGGugGGcCGcAUgGCCAUUGCCGUG- -5' |
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1090 | 5' | -58.7 | NC_000929.1 | + | 22987 | 0.66 | 0.465143 |
Target: 5'- gUCACCaCGGCcugACCGGUGGCaaagcgGGUGCc -3' miRNA: 3'- gGGUGG-GCCGca-UGGCCAUUG------CCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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