miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10902 3' -57.7 NC_002794.1 + 68092 0.66 0.919875
Target:  5'- cCGGCUGACCUGccuGACCguguuGAaCCGcGGCc -3'
miRNA:   3'- -GUUGGCUGGGCu--CUGGau---CU-GGC-CCG- -5'
10902 3' -57.7 NC_002794.1 + 1195 0.66 0.919875
Target:  5'- -cACCGGCCauauaaGGGCCgaucgGGGCCccgGGGCg -3'
miRNA:   3'- guUGGCUGGgc----UCUGGa----UCUGG---CCCG- -5'
10902 3' -57.7 NC_002794.1 + 42574 0.66 0.919875
Target:  5'- gCGGCgGACCCGcGGACggAGGa-GGGCg -3'
miRNA:   3'- -GUUGgCUGGGC-UCUGgaUCUggCCCG- -5'
10902 3' -57.7 NC_002794.1 + 100950 0.66 0.919875
Target:  5'- -uACCGugUgCGAGcucuACCUGGGCCGG-Ca -3'
miRNA:   3'- guUGGCugG-GCUC----UGGAUCUGGCCcG- -5'
10902 3' -57.7 NC_002794.1 + 82861 0.66 0.919875
Target:  5'- gCGACCGcgaCCGcGACCgcGACCGuGCg -3'
miRNA:   3'- -GUUGGCug-GGCuCUGGauCUGGCcCG- -5'
10902 3' -57.7 NC_002794.1 + 189600 0.66 0.919875
Target:  5'- uUAGCCcguccGCCCGAGACCcgccGACUcGGCc -3'
miRNA:   3'- -GUUGGc----UGGGCUCUGGau--CUGGcCCG- -5'
10902 3' -57.7 NC_002794.1 + 132571 0.66 0.919875
Target:  5'- gUAGCCagGACCgGguGGGCCgcuucACCGGGCg -3'
miRNA:   3'- -GUUGG--CUGGgC--UCUGGauc--UGGCCCG- -5'
10902 3' -57.7 NC_002794.1 + 111096 0.66 0.919875
Target:  5'- uCGGCgGGCCCGgcgGGACCguGGCCGucgacGGCg -3'
miRNA:   3'- -GUUGgCUGGGC---UCUGGauCUGGC-----CCG- -5'
10902 3' -57.7 NC_002794.1 + 136194 0.66 0.919875
Target:  5'- gCggUCGAugaaCCCGAGaACCUc--CCGGGCc -3'
miRNA:   3'- -GuuGGCU----GGGCUC-UGGAucuGGCCCG- -5'
10902 3' -57.7 NC_002794.1 + 189881 0.66 0.919875
Target:  5'- cCGACCGGCCCGcucGGGCCc--GCCGucaGCg -3'
miRNA:   3'- -GUUGGCUGGGC---UCUGGaucUGGCc--CG- -5'
10902 3' -57.7 NC_002794.1 + 148980 0.66 0.919333
Target:  5'- aCGGCCGACCUcuGGGugCUcggucGGAucgacuguuucaaCCGGGUc -3'
miRNA:   3'- -GUUGGCUGGG--CUCugGA-----UCU-------------GGCCCG- -5'
10902 3' -57.7 NC_002794.1 + 126462 0.66 0.914355
Target:  5'- --uCCGGCUcguCGGGACCUuGGCCuGGGg -3'
miRNA:   3'- guuGGCUGG---GCUCUGGAuCUGG-CCCg -5'
10902 3' -57.7 NC_002794.1 + 183161 0.66 0.914355
Target:  5'- gCGGCCGggcuGCCCGAG-CCggucggGGACCGagacGCg -3'
miRNA:   3'- -GUUGGC----UGGGCUCuGGa-----UCUGGCc---CG- -5'
10902 3' -57.7 NC_002794.1 + 149897 0.66 0.914355
Target:  5'- ---gUGACCCGGGAUCggcuguGuCUGGGCu -3'
miRNA:   3'- guugGCUGGGCUCUGGau----CuGGCCCG- -5'
10902 3' -57.7 NC_002794.1 + 75366 0.66 0.914355
Target:  5'- -cACCGACCCGccgcGGCCggcGGCgGcGGCc -3'
miRNA:   3'- guUGGCUGGGCu---CUGGau-CUGgC-CCG- -5'
10902 3' -57.7 NC_002794.1 + 157652 0.66 0.914355
Target:  5'- gAGCaCGAuCCCGAcgcgcuggcGGCUUGGGCCGcuuGGCg -3'
miRNA:   3'- gUUG-GCU-GGGCU---------CUGGAUCUGGC---CCG- -5'
10902 3' -57.7 NC_002794.1 + 82577 0.66 0.914355
Target:  5'- aGGCCGACgccgCCGAGACggAGACCcucuccgcGGCc -3'
miRNA:   3'- gUUGGCUG----GGCUCUGgaUCUGGc-------CCG- -5'
10902 3' -57.7 NC_002794.1 + 96723 0.66 0.914355
Target:  5'- cCGGCCGAgCCGGcgacGACC---GCCGGcGCg -3'
miRNA:   3'- -GUUGGCUgGGCU----CUGGaucUGGCC-CG- -5'
10902 3' -57.7 NC_002794.1 + 151958 0.66 0.908617
Target:  5'- aCGACgGcCCCGGGugCUccucGGcCCGGGa -3'
miRNA:   3'- -GUUGgCuGGGCUCugGA----UCuGGCCCg -5'
10902 3' -57.7 NC_002794.1 + 183506 0.66 0.908617
Target:  5'- --cCCGGcCCCGAGACCcaugucgcGGCCGuGCg -3'
miRNA:   3'- guuGGCU-GGGCUCUGGau------CUGGCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.