Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10902 | 5' | -52.5 | NC_002794.1 | + | 113376 | 0.66 | 0.989611 |
Target: 5'- gGGugCGGgcCGccGUCGugcAGGCGCUg -3' miRNA: 3'- aUCugGCCa-GCuuCAGUuu-UCCGCGA- -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 116867 | 0.66 | 0.989611 |
Target: 5'- -cGGCCGuGUCGcgcucGUCAgGGGGGCGCc -3' miRNA: 3'- auCUGGC-CAGCuu---CAGU-UUUCCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 106331 | 0.66 | 0.989611 |
Target: 5'- -cGACgGGUCGAcgguucgccgGGUCGAcggcgggcGGGCGCc -3' miRNA: 3'- auCUGgCCAGCU----------UCAGUUu-------UCCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 143021 | 0.66 | 0.989611 |
Target: 5'- -cGugCGGUCGGccgGGUCGAcgugcAGGGcCGCc -3' miRNA: 3'- auCugGCCAGCU---UCAGUU-----UUCC-GCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 67830 | 0.66 | 0.989611 |
Target: 5'- gUAGACCGGccCGccGUCGcccGGCGCc -3' miRNA: 3'- -AUCUGGCCa-GCuuCAGUuuuCCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 43341 | 0.66 | 0.989611 |
Target: 5'- cAGcGCCGGUUGAAGUCc-GAGuGCgGCUc -3' miRNA: 3'- aUC-UGGCCAGCUUCAGuuUUC-CG-CGA- -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 141964 | 0.66 | 0.988201 |
Target: 5'- -cGGCCGGgaugaUCG-AGUCGc-AGGCGCa -3' miRNA: 3'- auCUGGCC-----AGCuUCAGUuuUCCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 1208 | 0.66 | 0.988201 |
Target: 5'- aGGGCCGaUCGggGcCccGGGGCGUg -3' miRNA: 3'- aUCUGGCcAGCuuCaGuuUUCCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 179105 | 0.66 | 0.988201 |
Target: 5'- -cGuCCGGUCGuccgcGGUCc--GGGCGCg -3' miRNA: 3'- auCuGGCCAGCu----UCAGuuuUCCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 191869 | 0.66 | 0.988201 |
Target: 5'- aAGGCCGGcggCGGAGggggCGgcGGAGGCGg- -3' miRNA: 3'- aUCUGGCCa--GCUUCa---GU--UUUCCGCga -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 140177 | 0.66 | 0.988201 |
Target: 5'- uUGGAUCGGgucggcgacggCGucGUCGAGGGGCGa- -3' miRNA: 3'- -AUCUGGCCa----------GCuuCAGUUUUCCGCga -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 148113 | 0.66 | 0.986646 |
Target: 5'- aAGAagcgaCGGUCGguGUC---GGGCGCg -3' miRNA: 3'- aUCUg----GCCAGCuuCAGuuuUCCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 183177 | 0.66 | 0.984939 |
Target: 5'- --aGCCGGUCGggGacCGAGAcGCGCc -3' miRNA: 3'- aucUGGCCAGCuuCa-GUUUUcCGCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 161078 | 0.66 | 0.984939 |
Target: 5'- cGGuCCGGUUGAuGUUcgu-GGCGCUa -3' miRNA: 3'- aUCuGGCCAGCUuCAGuuuuCCGCGA- -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 133641 | 0.66 | 0.98307 |
Target: 5'- gGGAagaaGGUCGggGUCGgacccgaggGAGGGuCGCg -3' miRNA: 3'- aUCUgg--CCAGCuuCAGU---------UUUCC-GCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 149463 | 0.66 | 0.98307 |
Target: 5'- gGGGgCGGUCGAGGagCGAGgGGGgGCg -3' miRNA: 3'- aUCUgGCCAGCUUCa-GUUU-UCCgCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 115503 | 0.66 | 0.982676 |
Target: 5'- gUAGACCaGGUUGAGGUCcgccugucgcAGGaCGCg -3' miRNA: 3'- -AUCUGG-CCAGCUUCAGuuu-------UCC-GCGa -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 146879 | 0.66 | 0.982676 |
Target: 5'- gGGGCgCGGUCGGccgaugauuaUAAAAGGCGCUc -3' miRNA: 3'- aUCUG-GCCAGCUuca-------GUUUUCCGCGA- -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 91273 | 0.67 | 0.981031 |
Target: 5'- gUGGACCGGcgCGGccuguacguGUCGGcgcugagcGAGGCGCUc -3' miRNA: 3'- -AUCUGGCCa-GCUu--------CAGUU--------UUCCGCGA- -5' |
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10902 | 5' | -52.5 | NC_002794.1 | + | 185180 | 0.67 | 0.978814 |
Target: 5'- -cGGCgCGGUCGgcG-CGGucGGCGCg -3' miRNA: 3'- auCUG-GCCAGCuuCaGUUuuCCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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