miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10902 5' -52.5 NC_002794.1 + 10204 1.06 0.011978
Target:  5'- cUAGACCGGUCGAAGUCAAAAGGCGCUu -3'
miRNA:   3'- -AUCUGGCCAGCUUCAGUUUUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 30070 0.77 0.587704
Target:  5'- gGGuCCGGUCGcccGGUCGAcGAGGCGCg -3'
miRNA:   3'- aUCuGGCCAGCu--UCAGUU-UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 25114 0.76 0.608418
Target:  5'- aGGACCGGUCGAGaUCGAgcGGgGCa -3'
miRNA:   3'- aUCUGGCCAGCUUcAGUUuuCCgCGa -5'
10902 5' -52.5 NC_002794.1 + 116372 0.76 0.612571
Target:  5'- -cGACCGGUCGGuggcgugcgGGUCGAAgacgaagguguggcgGGGCGCg -3'
miRNA:   3'- auCUGGCCAGCU---------UCAGUUU---------------UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 156440 0.73 0.765219
Target:  5'- gAGACCGGUCGcgccgaaggcgguuGGUUAGGGGGCGg- -3'
miRNA:   3'- aUCUGGCCAGCu-------------UCAGUUUUCCGCga -5'
10902 5' -52.5 NC_002794.1 + 102943 0.72 0.816897
Target:  5'- gAGACCGGUgGAAG--AAGAGGUGUg -3'
miRNA:   3'- aUCUGGCCAgCUUCagUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 95523 0.72 0.816897
Target:  5'- -cGACCGcGUCGAAGaccucuucacgcUCAGcGAGGCGCa -3'
miRNA:   3'- auCUGGC-CAGCUUC------------AGUU-UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 1499 0.72 0.842446
Target:  5'- -cGACCGGccuuauaCGggGUCcGGAGGCGUg -3'
miRNA:   3'- auCUGGCCa------GCuuCAGuUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 154678 0.72 0.850579
Target:  5'- aAGACCGGuuUCGGucGUCGAucuGGGCGUg -3'
miRNA:   3'- aUCUGGCC--AGCUu-CAGUUu--UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 143416 0.71 0.858507
Target:  5'- cGGGCCGGgCGAAGgucCGGAAGGCcaGCa -3'
miRNA:   3'- aUCUGGCCaGCUUCa--GUUUUCCG--CGa -5'
10902 5' -52.5 NC_002794.1 + 143285 0.71 0.858507
Target:  5'- -cGGCCGcUCGggGUCGGGcGGGUGCa -3'
miRNA:   3'- auCUGGCcAGCuuCAGUUU-UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 154804 0.71 0.872982
Target:  5'- -uGACCGGgaucagaUCGggGUCGuucAAGGCGUc -3'
miRNA:   3'- auCUGGCC-------AGCuuCAGUu--UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 155905 0.71 0.873722
Target:  5'- aUAGACCGGcUCGAcGUgCGGAgccGGGUGCUu -3'
miRNA:   3'- -AUCUGGCC-AGCUuCA-GUUU---UCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 88706 0.71 0.873722
Target:  5'- -cGACC-GUCGggGUCGAuuGGgGCg -3'
miRNA:   3'- auCUGGcCAGCuuCAGUUuuCCgCGa -5'
10902 5' -52.5 NC_002794.1 + 13082 0.71 0.880997
Target:  5'- -cGACCGGcgCGAAGUCccgggggacGAGGUGCg -3'
miRNA:   3'- auCUGGCCa-GCUUCAGuu-------UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 149342 0.71 0.888044
Target:  5'- --aACCGGcCGggGUCGcGGGGGCGUg -3'
miRNA:   3'- aucUGGCCaGCuuCAGU-UUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 145594 0.7 0.901435
Target:  5'- -cGGCCGGcucccgCGGAGUC---GGGCGCg -3'
miRNA:   3'- auCUGGCCa-----GCUUCAGuuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 95777 0.7 0.907772
Target:  5'- -cGACggCGGcCGggG-CGAGAGGCGCg -3'
miRNA:   3'- auCUG--GCCaGCuuCaGUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 16208 0.7 0.907772
Target:  5'- cUGGGCaCGGUCGAGGUCc---GGCGg- -3'
miRNA:   3'- -AUCUG-GCCAGCUUCAGuuuuCCGCga -5'
10902 5' -52.5 NC_002794.1 + 137532 0.7 0.907772
Target:  5'- -uGACCGaGaCGGAGUCuucGGGCGCg -3'
miRNA:   3'- auCUGGC-CaGCUUCAGuuuUCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.