miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10902 5' -52.5 NC_002794.1 + 120876 0.69 0.925315
Target:  5'- -cGGCUGGUguccgaacggCGAGGUCAccgcGGGGGUGCUg -3'
miRNA:   3'- auCUGGCCA----------GCUUCAGU----UUUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 78453 0.69 0.940166
Target:  5'- cGGACgcgcucgCGGUCucGGUCAucAGGCGCa -3'
miRNA:   3'- aUCUG-------GCCAGcuUCAGUuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 41186 0.69 0.940641
Target:  5'- gAGGCCGagcGUCGucGUCAc--GGCGCUg -3'
miRNA:   3'- aUCUGGC---CAGCuuCAGUuuuCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 126424 0.69 0.945259
Target:  5'- cUGGcuGCUGGUCGAGGUgu--GGGCGCc -3'
miRNA:   3'- -AUC--UGGCCAGCUUCAguuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 104890 0.68 0.949635
Target:  5'- cGGGCCGGccgCGAGGcgccgugcugcUCGAGcAGGCGCc -3'
miRNA:   3'- aUCUGGCCa--GCUUC-----------AGUUU-UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 107042 0.68 0.953771
Target:  5'- gGGACCcccgcGUCGGAGgCGGcGGGCGCg -3'
miRNA:   3'- aUCUGGc----CAGCUUCaGUUuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 176481 0.68 0.953771
Target:  5'- cAGACCGuGUCGGuuGGUucucucacgagCAcGAGGCGCa -3'
miRNA:   3'- aUCUGGC-CAGCU--UCA-----------GUuUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 103670 0.68 0.953771
Target:  5'- cGGugCGaGUgGAAGUgGAAGGGCaGCg -3'
miRNA:   3'- aUCugGC-CAgCUUCAgUUUUCCG-CGa -5'
10902 5' -52.5 NC_002794.1 + 36232 0.68 0.957672
Target:  5'- cAGGCCcGGUCGAuauaggccccguAGUCGAu-GGCGUc -3'
miRNA:   3'- aUCUGG-CCAGCU------------UCAGUUuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 37385 0.68 0.961342
Target:  5'- cAGGCC-GUCGAAGUCGcuguAGaGCGCc -3'
miRNA:   3'- aUCUGGcCAGCUUCAGUuu--UC-CGCGa -5'
10902 5' -52.5 NC_002794.1 + 147214 0.68 0.964785
Target:  5'- cGGGCCGGggcCGggG-CGuu-GGCGCg -3'
miRNA:   3'- aUCUGGCCa--GCuuCaGUuuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 111397 0.68 0.968007
Target:  5'- -cGGCCaGcgcUCGggGUCGAGaccguAGGCGCg -3'
miRNA:   3'- auCUGGcC---AGCuuCAGUUU-----UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 51225 0.67 0.971015
Target:  5'- -cGGCCGGcCGAugggaaacGGUCGcuucuaGAAGGCGUg -3'
miRNA:   3'- auCUGGCCaGCU--------UCAGU------UUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 124112 0.67 0.971015
Target:  5'- aGGGCCgGGUCGAc-UCGAGAGcGCGUc -3'
miRNA:   3'- aUCUGG-CCAGCUucAGUUUUC-CGCGa -5'
10902 5' -52.5 NC_002794.1 + 138376 0.67 0.976411
Target:  5'- --uACCGGUCGGcgauGGgcugcCAGAAGGCGUc -3'
miRNA:   3'- aucUGGCCAGCU----UCa----GUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 148225 0.67 0.976411
Target:  5'- cGGucuCCGGUCGgcGUCAccacGCGCUg -3'
miRNA:   3'- aUCu--GGCCAGCuuCAGUuuucCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 18079 0.67 0.976411
Target:  5'- -uGugCGuGUCGguGgcgCAGAAGGCGCc -3'
miRNA:   3'- auCugGC-CAGCuuCa--GUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 185180 0.67 0.978814
Target:  5'- -cGGCgCGGUCGgcG-CGGucGGCGCg -3'
miRNA:   3'- auCUG-GCCAGCuuCaGUUuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 91273 0.67 0.981031
Target:  5'- gUGGACCGGcgCGGccuguacguGUCGGcgcugagcGAGGCGCUc -3'
miRNA:   3'- -AUCUGGCCa-GCUu--------CAGUU--------UUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 146879 0.66 0.982676
Target:  5'- gGGGCgCGGUCGGccgaugauuaUAAAAGGCGCUc -3'
miRNA:   3'- aUCUG-GCCAGCUuca-------GUUUUCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.