miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10902 5' -52.5 NC_002794.1 + 1208 0.66 0.988201
Target:  5'- aGGGCCGaUCGggGcCccGGGGCGUg -3'
miRNA:   3'- aUCUGGCcAGCuuCaGuuUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 1499 0.72 0.842446
Target:  5'- -cGACCGGccuuauaCGggGUCcGGAGGCGUg -3'
miRNA:   3'- auCUGGCCa------GCuuCAGuUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 10204 1.06 0.011978
Target:  5'- cUAGACCGGUCGAAGUCAAAAGGCGCUu -3'
miRNA:   3'- -AUCUGGCCAGCUUCAGUUUUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 13082 0.71 0.880997
Target:  5'- -cGACCGGcgCGAAGUCccgggggacGAGGUGCg -3'
miRNA:   3'- auCUGGCCa-GCUUCAGuu-------UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 16208 0.7 0.907772
Target:  5'- cUGGGCaCGGUCGAGGUCc---GGCGg- -3'
miRNA:   3'- -AUCUG-GCCAGCUUCAGuuuuCCGCga -5'
10902 5' -52.5 NC_002794.1 + 18079 0.67 0.976411
Target:  5'- -uGugCGuGUCGguGgcgCAGAAGGCGCc -3'
miRNA:   3'- auCugGC-CAGCuuCa--GUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 25114 0.76 0.608418
Target:  5'- aGGACCGGUCGAGaUCGAgcGGgGCa -3'
miRNA:   3'- aUCUGGCCAGCUUcAGUUuuCCgCGa -5'
10902 5' -52.5 NC_002794.1 + 30070 0.77 0.587704
Target:  5'- gGGuCCGGUCGcccGGUCGAcGAGGCGCg -3'
miRNA:   3'- aUCuGGCCAGCu--UCAGUU-UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 36232 0.68 0.957672
Target:  5'- cAGGCCcGGUCGAuauaggccccguAGUCGAu-GGCGUc -3'
miRNA:   3'- aUCUGG-CCAGCU------------UCAGUUuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 37385 0.68 0.961342
Target:  5'- cAGGCC-GUCGAAGUCGcuguAGaGCGCc -3'
miRNA:   3'- aUCUGGcCAGCUUCAGUuu--UC-CGCGa -5'
10902 5' -52.5 NC_002794.1 + 41186 0.69 0.940641
Target:  5'- gAGGCCGagcGUCGucGUCAc--GGCGCUg -3'
miRNA:   3'- aUCUGGC---CAGCuuCAGUuuuCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 43341 0.66 0.989611
Target:  5'- cAGcGCCGGUUGAAGUCc-GAGuGCgGCUc -3'
miRNA:   3'- aUC-UGGCCAGCUUCAGuuUUC-CG-CGA- -5'
10902 5' -52.5 NC_002794.1 + 51225 0.67 0.971015
Target:  5'- -cGGCCGGcCGAugggaaacGGUCGcuucuaGAAGGCGUg -3'
miRNA:   3'- auCUGGCCaGCU--------UCAGU------UUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 67830 0.66 0.989611
Target:  5'- gUAGACCGGccCGccGUCGcccGGCGCc -3'
miRNA:   3'- -AUCUGGCCa-GCuuCAGUuuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 78453 0.69 0.940166
Target:  5'- cGGACgcgcucgCGGUCucGGUCAucAGGCGCa -3'
miRNA:   3'- aUCUG-------GCCAGcuUCAGUuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 88706 0.71 0.873722
Target:  5'- -cGACC-GUCGggGUCGAuuGGgGCg -3'
miRNA:   3'- auCUGGcCAGCuuCAGUUuuCCgCGa -5'
10902 5' -52.5 NC_002794.1 + 91273 0.67 0.981031
Target:  5'- gUGGACCGGcgCGGccuguacguGUCGGcgcugagcGAGGCGCUc -3'
miRNA:   3'- -AUCUGGCCa-GCUu--------CAGUU--------UUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 95523 0.72 0.816897
Target:  5'- -cGACCGcGUCGAAGaccucuucacgcUCAGcGAGGCGCa -3'
miRNA:   3'- auCUGGC-CAGCUUC------------AGUU-UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 95777 0.7 0.907772
Target:  5'- -cGACggCGGcCGggG-CGAGAGGCGCg -3'
miRNA:   3'- auCUG--GCCaGCuuCaGUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 102943 0.72 0.816897
Target:  5'- gAGACCGGUgGAAG--AAGAGGUGUg -3'
miRNA:   3'- aUCUGGCCAgCUUCagUUUUCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.